Factsheet for HORVU2Hr1G081930.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G332600.2	Wheat	nucleus	95.23	95.23
TraesCS2A01G330100.3	Wheat	nucleus	94.22	94.91
TraesCS2B01G352200.2	Wheat	nucleus	93.93	94.89
Os04t0472400-00	Rice	mitochondrion	9.25	67.37
Zm00001d025673_P005	Maize	nucleus	64.31	63.03
KXG26527	Sorghum	nucleus	64.45	62.73
Zm00001d003329_P003	Maize	nucleus	63.01	53.43
VIT_06s0009g02150.t01	Wine grape	cytosol	6.65	52.27
KRH66489	Soybean	mitochondrion	10.4	47.06
VIT_10s0042g00630.t01	Wine grape	cytosol	2.89	44.44
VIT_05s0029g00530.t01	Wine grape	plastid	2.89	44.44
VIT_13s0064g01190.t01	Wine grape	nucleus	43.35	42.86
GSMUA_Achr9P16060_001	Banana	golgi	41.04	39.94
Solyc01g086980.2.1	Tomato	nucleus	37.43	38.6
KRH43491	Soybean	nucleus	37.72	38.33
KRH13922	Soybean	nucleus	37.28	38.28
CDY52667	Canola	nucleus	32.95	38.0
CDY50537	Canola	nucleus	32.95	37.5
Bra038740.1-P	Field mustard	nucleus	32.95	37.01
Bra001462.1-P	Field mustard	nucleus	33.24	36.62
CDX73810	Canola	nucleus	32.08	36.51
CDY00789	Canola	nucleus	31.65	36.5
AT3G12640.3	Thale cress	nucleus	34.83	36.4
HORVU7Hr1G050300.3	Barley	nucleus	34.39	34.29
HORVU6Hr1G077700.12	Barley	nucleus	9.1	29.03
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	7.66	22.84
HORVU2Hr1G066510.2	Barley	mitochondrion	18.21	18.42

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	UniProt:A0A287IMY6	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G081930	EnsemblPlants:HORVU2Hr1G081930.1	InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275	InterPro:PWI_dom
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000B4725BB	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:594518649..594529070

Molecular Weight (calculated)

76196.1 Da

IEP (calculated)

10.291

GRAVY (calculated)

-0.704

Length

692 amino acids

Sequence
(BLAST)

001: MDGGERTFKA NFSAEGVALL RQRVRAKLHE LMGDYTDDTL VEYVVVLLRN GRRKDEAAKE LLVFLGDDNN AFVSWLWDHL SSNLHLYVQS KAVSANDEAK
101: NTRSTARGLP LHNSSSNAQT SRVPEAETQK TTRVQPKREW GGIVREQSDA VPLRSVVAPV SHAEEKTNHT QAVRRTRSPD MHNHRKRGRE EDTRPVKKTS
201: HEVIGAPRRL LQFAVRDAVR LVQPPTPRSE SSSKRLRSVV STVESDSAAN GRLQKMKSDV RVPGATAAFR AAAEAAEDVL KDRYSSESVF DRLGRRPLLA
301: TTEEPFDFRE KDPKYGEYEH IDNVRAENQV EFHDRNQYVA KDTCMYDSGT EKAADSAFDT DRYDDTGAVR YNGVNPYQNK LSSSGGKESS VKWYNKAEGA
401: AGVRSRRSIA QDTRASSGPR PSEKILNISV NNNTRNPPYH EIARNAGTFE HQVPIGKKDV GSIKSNATVA HAKVTHMTDK SKDLVHSSSL VEATKASSVV
501: GGSTGQPESA PDSRTVFVSN VHFGATKDGL SCHFNKFGAV LKTLIVSDGA TGQPTGSAYI EFLEKESAEK ALTLNGTSFM SRILKVVRKS SVEVPQQPAW
601: SRGVRASPFA SRLIRTAYPR PTFPGAMRGR LAIRGNARSF QWKRGTADSV DAGKPSQATP VTPGNQMVTP ITRSFTYTRT EPKQDVGATA NV

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.