CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50537	Canola	nucleus	95.5	94.24
Bra038740.1-P	Field mustard	nucleus	92.17	89.77
CDY00789	Canola	nucleus	77.83	77.83
CDX73810	Canola	nucleus	78.33	77.3
AT3G12640.3	Thale cress	nucleus	75.33	68.28
VIT_06s0009g02150.t01	Wine grape	cytosol	9.17	62.5
KRH66489	Soybean	mitochondrion	12.67	49.67
Solyc01g086980.2.1	Tomato	nucleus	43.17	38.6
KRH43491	Soybean	nucleus	43.33	38.18
KRH13922	Soybean	nucleus	42.0	37.39
Os04t0472400-00	Rice	mitochondrion	5.33	33.68
HORVU2Hr1G081930.1	Barley	nucleus	38.0	32.95
TraesCS2A01G330100.3	Wheat	nucleus	37.17	32.46
TraesCS2B01G352200.2	Wheat	nucleus	37.0	32.41
TraesCS2D01G332600.2	Wheat	nucleus	37.17	32.23
KXG26527	Sorghum	nucleus	37.83	31.93
Zm00001d025673_P005	Maize	nucleus	36.33	30.88
Os08t0504600-01	Rice	nucleus	34.0	29.82
GSMUA_Achr9P16060_001	Banana	golgi	35.17	29.68
Zm00001d031422_P006	Maize	nucleus	32.83	28.39
EES15409	Sorghum	nucleus	32.5	28.1
Zm00001d052888_P004	Maize	nucleus	32.17	27.77
TraesCS7A01G245200.1	Wheat	nucleus	31.83	27.44
HORVU7Hr1G050300.3	Barley	nucleus	31.67	27.38
TraesCS7D01G243800.1	Wheat	nucleus	31.67	27.3
TraesCS7B01G146300.1	Wheat	nucleus	31.5	27.16
Zm00001d003329_P003	Maize	nucleus	36.0	26.47
CDY37814	Canola	nucleus	6.67	25.64
CDY33970	Canola	nucleus	9.0	25.59
CDY05837	Canola	nucleus	9.67	25.55
CDX71690	Canola	nucleus	9.67	25.55
CDY08805	Canola	nucleus, plasma membrane	9.33	25.45
CDY16338	Canola	nucleus	9.67	25.11
CDX91567	Canola	nucleus	9.5	25.0
CDY55162	Canola	nucleus	9.17	25.0
CDY32641	Canola	nucleus	9.33	24.89
CDY38851	Canola	nucleus	9.33	24.89
CDY33952	Canola	cytosol, golgi, nucleus	8.17	23.11
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	3.83	22.55

Protein Annotations

Gene3D:1.20.1390.10	Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078IRR5	UniProt:A0A078IRR5	EnsemblPlants:CDY52667
ProteinID:CDY52667	ProteinID:CDY52667.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00007559001
InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480
PFscan:PS50102	PANTHER:PTHR45275	InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0004EEAC43	SEG:seg	:	:	:

Description

BnaC01g38570DBnaC01g38570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRR5]

Coordinates

chrLK033115:+:33945..37134

Molecular Weight (calculated)

66055.8 Da

IEP (calculated)

9.859

GRAVY (calculated)

-0.786

Length

600 amino acids

Sequence
(BLAST)

001: MGSDDDDRTF NGDFSEEGVV KLKERVKVKL KEYMGDYTDD ILVEYVIVLL KNGRRKEEAK NELKIFLADD SDSFVSWLWD HLGESVDEYF TSSHVEKTNM
101: RSSLVSSLNE DKALVQMDSE SEKGRAPSRR SRQWRTQPNA SDVPPLLSSE SHSHRKRSKI DSSRNEQREA KPVVSSRLLQ FAMRDALGTS KPTEPSLKRL
201: RSVVSASTQD SSEPDPPRKT RSVAKAVNPI ATVMKAVSEA AEDAKNPKTG RSVFDRISHS TGFPETSEVP LKNEERSEDQ EPVQHQYSQR LDNNGVYVEN
301: MTTFETGLQP SRLGPSVNGS YSSSSLGNRI NNPKSLQHRL VDDPNRVKGT NYQDHFTEVG TKQKNGGFSG SADTGKTVKL EEQMKVPGVG LQRYTSSEAI
401: TESSTVKPAA IAKEESLIKK PVPGTLSASR PLEDARSRTI FVANVHFGAT KDSLSRHFNK FGEVLKAVIV TDPATGQPSG SAYIEFTRKE SAESALSLDG
501: TSFMSRILKI VKGSNEQQQE AASSMSWSRA GRYARASSPY RRGIPGGAFR GRSVVRGGAR SMQWKRDSAE TGTNSVAAAP STRSMTYVRT DSQSNGNATA

Best Arabidopsis Sequence Match ( AT3G12640.1 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.