CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022536.1-P	Field mustard	nucleus	98.7	98.7
CDX91567	Canola	nucleus	96.97	98.25
CDY05837	Canola	nucleus	87.88	89.43
CDY38851	Canola	nucleus	86.58	88.89
CDY32641	Canola	nucleus	86.58	88.89
CDX71690	Canola	nucleus	86.15	87.67
AT5G51120.2	Thale cress	nucleus	86.15	75.09
PGSC0003DMT400021468	Potato	cytosol, nucleus	34.2	74.53
KRG92240	Soybean	nucleus	66.67	71.96
KRH34559	Soybean	nucleus	66.67	71.96
Solyc03g094080.2.1	Tomato	nucleus	49.35	71.7
CDY37814	Canola	nucleus	48.05	71.15
CDY33970	Canola	nucleus	61.04	66.82
CDY08805	Canola	nucleus, plasma membrane	62.34	65.45
CDY55162	Canola	nucleus	61.9	65.0
Solyc03g094040.2.1	Tomato	mitochondrion	42.42	64.05
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	23.81	53.92
CDY33952	Canola	cytosol, golgi, nucleus	49.35	53.77
KXG38899	Sorghum	nucleus	42.86	51.56
TraesCS1D01G218400.1	Wheat	nucleus	45.45	51.22
TraesCS1A01G216200.1	Wheat	nucleus	45.02	50.49
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	43.72	43.53
Solyc03g094060.2.1	Tomato	cytosol	41.99	32.88
CDX73810	Canola	nucleus	27.27	10.36
CDY00789	Canola	nucleus	26.41	10.17
CDY52667	Canola	nucleus	25.11	9.67
CDY50537	Canola	nucleus	25.11	9.54

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	GO:A0A078FVA1	UniProt:A0A078FVA1	EnsemblPlants:CDY16338	ProteinID:CDY16338
ProteinID:CDY16338.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00090866001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EE7DEC	SEG:seg	:	:	:	:

Description

BnaA02g11420DBnaA02g11420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVA1]

Coordinates

chrLK032063:-:51080..52960

Molecular Weight (calculated)

26379.5 Da

IEP (calculated)

4.310

GRAVY (calculated)

-0.957

Length

231 amino acids

Sequence
(BLAST)

001: MTLQDEQEHE VYGGDIPEED EGEMETDEYQ EHAGEEEEGA AAAEDEEEEL EPGSASRDLE DMKKRLKEIE EEASALREMQ AKAENDMAAA QDPSSAISAA
101: EKEEVDLRSI YVGNVDYACT PEEVQQHFQS CGTVNRVTIL TDKFGQPKGF AYVEFVEEEA VQNSLVLNET ELHGRQIKVS AKRTNVPGMR QFRGRRPFRP
201: MRGFMPGPPF YPPYAYGRVP RFRRPMRYRP Y

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.