Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400021468 | Potato | cytosol, nucleus | 31.86 | 88.68 |
| Solyc03g094040.2.1 | Tomato | mitochondrion | 45.76 | 88.24 |
| Solyc03g094080.2.1 | Tomato | nucleus | 38.64 | 71.7 |
| KRG92240 | Soybean | nucleus | 34.24 | 47.2 |
| KRH34559 | Soybean | nucleus | 33.9 | 46.73 |
| Solyc10g047360.1.1 | Tomato | nucleus | 30.85 | 46.43 |
| Bra029187.1-P | Field mustard | nucleus | 32.88 | 43.11 |
| CDY32641 | Canola | nucleus | 32.88 | 43.11 |
| CDY38851 | Canola | nucleus | 32.88 | 43.11 |
| Solyc11g009090.1.1 | Tomato | nucleus | 31.86 | 42.92 |
| CDX91567 | Canola | nucleus | 32.88 | 42.54 |
| Bra022536.1-P | Field mustard | nucleus | 32.88 | 41.99 |
| CDY16338 | Canola | nucleus | 32.88 | 41.99 |
| CDY05837 | Canola | nucleus | 32.2 | 41.85 |
| Bra035725.1-P | Field mustard | nucleus | 32.2 | 41.85 |
| CDX71690 | Canola | nucleus | 31.86 | 41.41 |
| TraesCS1D01G218400.1 | Wheat | nucleus | 28.14 | 40.49 |
| KXG38899 | Sorghum | nucleus | 26.1 | 40.1 |
| TraesCS1A01G216200.1 | Wheat | nucleus | 27.8 | 39.81 |
| AT5G51120.2 | Thale cress | nucleus | 33.22 | 36.98 |
| HORVU1Hr1G055400.2 | Barley | cytosol, golgi, nucleus | 26.78 | 34.05 |
| Solyc03g094090.2.1 | Tomato | nucleus | 3.39 | 9.52 |
| Solyc01g086980.2.1 | Tomato | nucleus | 17.97 | 7.9 |
Protein Annotations
| EnsemblPlants:Solyc03g094060.2.1 | EnsemblPlantsGene:Solyc03g094060.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43987 | PANTHER:PTHR43987:SF4 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002767672 | UniProt:K4BIT1 | MapMan:16.2.1.1.2 | : | : |
Description
No Description!
Coordinates
chr3:-:55770779..55778663
Molecular Weight (calculated)
32737.5 Da
IEP (calculated)
8.413
GRAVY (calculated)
-0.063
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGEVRCFEP RRSLWPIPAP KNPTASSTQD EKEEVDSRSI YVGNVDYACK PGEVQQHFQV CGTVNRVTIL TDKLGRPKGF AYVEFFERES VKNALLLNES
101: ELLGRKLKVS AKRTNVPGMN QFRGGRFNPY AGFRPRRAFV PGAPVIPPFG SSELPAFLIN GILRCLWLAG FLGLLPLNEV ECWVSRKARA CAMGLLLSVT
201: ILIEYDLKSY TSGLAAHLLE LVYFQVHQCA SEDEPIVTYT YLKGITGLFL RRCITALAMH SADPFCTGST CQNQLFFYCN TNANVGNNAP CTTTS
101: ELLGRKLKVS AKRTNVPGMN QFRGGRFNPY AGFRPRRAFV PGAPVIPPFG SSELPAFLIN GILRCLWLAG FLGLLPLNEV ECWVSRKARA CAMGLLLSVT
201: ILIEYDLKSY TSGLAAHLLE LVYFQVHQCA SEDEPIVTYT YLKGITGLFL RRCITALAMH SADPFCTGST CQNQLFFYCN TNANVGNNAP CTTTS
001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY
Arabidopsis Description
PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.