CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029187.1-P	Field mustard	nucleus	100.0	100.0
CDY32641	Canola	nucleus	100.0	100.0
CDY05837	Canola	nucleus	92.0	91.19
CDX71690	Canola	nucleus	91.11	90.31
CDX91567	Canola	nucleus	88.89	87.72
CDY16338	Canola	nucleus	88.89	86.58
AT5G51120.2	Thale cress	nucleus	90.67	76.98
PGSC0003DMT400021468	Potato	cytosol, nucleus	34.67	73.58
KRH34559	Soybean	nucleus	69.78	73.36
KRG92240	Soybean	nucleus	69.78	73.36
Solyc03g094080.2.1	Tomato	nucleus	51.11	72.33
CDY37814	Canola	nucleus	49.33	71.15
CDY33970	Canola	nucleus	63.56	67.77
CDY55162	Canola	nucleus	66.22	67.73
CDY08805	Canola	nucleus, plasma membrane	65.78	67.27
Solyc03g094040.2.1	Tomato	mitochondrion	43.56	64.05
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	25.33	55.88
CDY33952	Canola	cytosol, golgi, nucleus	51.56	54.72
TraesCS1D01G218400.1	Wheat	nucleus	46.67	51.22
TraesCS1A01G216200.1	Wheat	nucleus	46.22	50.49
KXG38899	Sorghum	nucleus	42.67	50.0
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	44.0	42.67
Solyc03g094060.2.1	Tomato	cytosol	43.11	32.88
CDX73810	Canola	nucleus	26.67	9.87
CDY00789	Canola	nucleus	25.33	9.5
CDY52667	Canola	nucleus	24.89	9.33
CDY50537	Canola	nucleus	24.89	9.21

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	GO:A0A078HML1	UniProt:A0A078HML1	ProteinID:CDY32641.1	EnsemblPlants:CDY38851
ProteinID:CDY38851	ProteinID:CDY38851.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00066690001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000254015F	SEG:seg	:	:	:

Description

BnaA03g13280DBnaA03g13280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HML1]

Coordinates

chrLK032434:+:29505..31251

Molecular Weight (calculated)

25513.7 Da

IEP (calculated)

4.464

GRAVY (calculated)

-0.933

Length

225 amino acids

Sequence
(BLAST)

001: MTLNDEQEHE VYGGEIPEEE GEMETDEYEE HGGEEGGAAG DEELEPGSSA KDLEDMKKRI KEIEEEAGAL REMQAKAEKE MGADQDPSGA ISSAEKEEVD
101: SRSIYVGNVD YACTPEEVQQ HFQSCGTVNR VTILTDKFGQ PKGFAYVEFV EEDAVQNSLI LNESELHGRQ IKVSAKRTNV PGMRQFRGRR PFRPMRGFMP
201: GIPFYAPYAY GRVPRFRRPM RYRPY

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.