Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 99.02 | 99.02 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 43.14 | 45.83 |
| Solyc03g094090.2.1 | Tomato | nucleus | 47.06 | 45.71 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 88.24 | 42.45 |
| CDY33970 | Canola | nucleus | 83.33 | 40.28 |
| CDY55162 | Canola | nucleus | 82.35 | 38.18 |
| CDY08805 | Canola | nucleus, plasma membrane | 82.35 | 38.18 |
| AT5G65260.1 | Thale cress | nucleus | 81.37 | 37.73 |
| KRH43152 | Soybean | nucleus | 74.51 | 34.86 |
| KRH59303 | Soybean | nucleus | 72.55 | 34.42 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 70.59 | 33.33 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 70.59 | 33.33 |
| PGSC0003DMT400041675 | Potato | nucleus | 70.59 | 33.03 |
| PGSC0003DMT400043273 | Potato | nucleus | 65.69 | 31.02 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 65.69 | 31.02 |
| EER88092 | Sorghum | nucleus | 60.78 | 30.54 |
| KXG30711 | Sorghum | nucleus | 61.76 | 29.72 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 60.78 | 29.67 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 58.82 | 29.56 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 59.8 | 29.05 |
| Os02t0757900-02 | Rice | nucleus | 60.78 | 28.7 |
| Os06t0219600-01 | Rice | nucleus | 56.86 | 28.43 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 58.82 | 27.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.9 | 26.92 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 59.8 | 26.52 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 59.8 | 26.52 |
| CDY38851 | Canola | nucleus | 55.88 | 25.33 |
| CDY32641 | Canola | nucleus | 55.88 | 25.33 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 58.82 | 24.39 |
| CDY05837 | Canola | nucleus | 53.92 | 24.23 |
| CDX71690 | Canola | nucleus | 53.92 | 24.23 |
| CDX91567 | Canola | nucleus | 53.92 | 24.12 |
| CDY16338 | Canola | nucleus | 53.92 | 23.81 |
| CDY37814 | Canola | nucleus | 36.27 | 23.72 |
| Zm00001d044869_P001 | Maize | nucleus | 60.78 | 22.71 |
| Zm00001d052198_P002 | Maize | nucleus | 58.82 | 22.56 |
| Zm00001d018112_P004 | Maize | nucleus | 61.76 | 22.11 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 45.1 | 20.72 |
| CDX73810 | Canola | nucleus | 24.51 | 4.11 |
| CDY00789 | Canola | nucleus | 23.53 | 4.0 |
| CDY52667 | Canola | nucleus | 22.55 | 3.83 |
| CDY50537 | Canola | nucleus | 22.55 | 3.78 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 2.94 | 2.91 |
Protein Annotations
| EnsemblPlants:CDY31306 | EnsemblPlantsGene:GSBRNA2T00047475001 | ncoils:Coil | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF3 | ProteinID:CDY31306 |
| ProteinID:CDY31306.1 | SEG:seg | UniParc:UPI0004EE61CC | UniProt:A0A078H0L8 | MapMan:35.1 | : |
Description
BnaA02g34350DBnaA02g34350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0L8]
Coordinates
chrLK032270:-:142948..143525
Molecular Weight (calculated)
11316.3 Da
IEP (calculated)
3.818
GRAVY (calculated)
-0.537
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEHEVYG GEIPDVGEMD GDMDMMTAAD DDAAKELDEM KKRLKEIEDE AAALREMQAK VEKDMGPQDP ATMAADQAGK EEVDARSVFV GNVSICLCFW
101: LI
101: LI
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.