Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30711 | Sorghum | nucleus | 72.98 | 98.11 |
| Os02t0757900-02 | Rice | nucleus | 72.63 | 95.83 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 69.82 | 94.76 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 69.12 | 90.78 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 29.82 | 82.52 |
| Zm00001d052198_P002 | Maize | nucleus | 76.49 | 81.95 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 58.25 | 81.77 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 69.82 | 80.89 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 61.75 | 79.28 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 57.54 | 75.93 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 57.54 | 75.93 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 56.84 | 75.0 |
| KRH59303 | Soybean | nucleus | 55.09 | 73.02 |
| AT5G10350.1 | Thale cress | nucleus | 55.09 | 72.35 |
| Solyc11g009090.1.1 | Tomato | nucleus | 54.74 | 71.23 |
| CDY37814 | Canola | nucleus | 38.95 | 71.15 |
| KRH43152 | Soybean | nucleus | 54.39 | 71.1 |
| PGSC0003DMT400041675 | Potato | nucleus | 54.39 | 71.1 |
| CDY33970 | Canola | nucleus | 52.63 | 71.09 |
| AT5G65260.1 | Thale cress | nucleus | 54.74 | 70.91 |
| CDY08805 | Canola | nucleus, plasma membrane | 54.04 | 70.0 |
| Bra024372.1-P | Field mustard | nucleus | 54.04 | 70.0 |
| CDY55162 | Canola | nucleus | 53.68 | 69.55 |
| PGSC0003DMT400043273 | Potato | nucleus | 51.23 | 67.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.37 | 64.9 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 22.11 | 61.76 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 22.11 | 61.76 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 44.56 | 59.91 |
| Zm00001d044869_P001 | Maize | nucleus | 56.84 | 59.34 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 24.21 | 56.56 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 15.44 | 45.83 |
| Solyc03g094090.2.1 | Tomato | nucleus | 15.79 | 42.86 |
| Zm00001d052888_P004 | Maize | nucleus | 21.75 | 8.92 |
| Zm00001d031422_P006 | Maize | nucleus | 21.4 | 8.79 |
| Zm00001d025673_P005 | Maize | nucleus | 21.05 | 8.5 |
| Zm00001d003329_P003 | Maize | nucleus | 21.4 | 7.48 |
Protein Annotations
| EntrezGene:100194063 | MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6HKT9 | ProteinID:AQK75040.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000845486E | EnsemblPlantsGene:Zm00001d018112 | EnsemblPlants:Zm00001d018112_P004 |
| EnsemblPlants:Zm00001d018112_T004 | SEG:seg | : | : | : | : |
Description
Polyadenylate-binding protein 3
Coordinates
chr5:-:214564081..214569814
Molecular Weight (calculated)
31951.6 Da
IEP (calculated)
5.108
GRAVY (calculated)
-0.646
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEEHEVYG QEIPEDGDMD GADVDMAASG DDAAKLQELD EMKRRLKEME EEAAALRDMQ AKVAKEMQGG DPSASTAEAK EQVDARSVYV GNMTSLAKQK
101: KSAQSCCLHS GWDFLTGAGM AASDVVRSCW STDITWVVRK YDMLLIVVYG ILWGFSAPGP GADPKVDYAC TPEEVQQHFQ ACGTVNRVTI LTDKFGQPKG
201: FAYVEFLEQE GVQEALNLNE SELHGRQIKV APKRTNVPGM KQRPPRGYNP YHGYPYRSYG APYFPPYGYG RAPRFRRPMR YRPYF
101: KSAQSCCLHS GWDFLTGAGM AASDVVRSCW STDITWVVRK YDMLLIVVYG ILWGFSAPGP GADPKVDYAC TPEEVQQHFQ ACGTVNRVTI LTDKFGQPKG
201: FAYVEFLEQE GVQEALNLNE SELHGRQIKV APKRTNVPGM KQRPPRGYNP YHGYPYRSYG APYFPPYGYG RAPRFRRPMR YRPYF
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Arabidopsis Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.