Factsheet for Solyc11g009090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041675	Potato	nucleus	97.72	98.17
KRH59303	Soybean	nucleus	81.74	83.26
KRH43152	Soybean	nucleus	80.37	80.73
GSMUA_Achr2P22250_001	Banana	nucleus	78.54	79.63
GSMUA_Achr6P10340_001	Banana	nucleus	76.71	77.78
EER88092	Sorghum	nucleus	71.69	77.34
GSMUA_Achr3P21300_001	Banana	nucleus	75.34	76.39
Zm00001d037200_P004	Maize	extracellular, nucleus	70.78	76.35
TraesCS6A01G316300.1	Wheat	nucleus	72.15	75.24
Solyc10g047360.1.1	Tomato	nucleus	66.21	73.98
KXG30711	Sorghum	nucleus	71.23	73.58
Os02t0757900-02	Rice	nucleus	71.69	72.69
Os06t0219600-01	Rice	nucleus	67.58	72.55
TraesCS7B01G083600.1	Wheat	nucleus	68.95	72.25
HORVU6Hr1G077700.12	Barley	nucleus	70.78	71.43
GSMUA_AchrUn_...	Banana	nucleus	63.47	66.83
Solyc03g094080.2.1	Tomato	nucleus	48.4	66.67
VIT_00s0625g00040.t01	Wine grape	cytosol	35.62	63.93
TraesCS6B01G346800.2	Wheat	nucleus	71.23	63.41
TraesCS6D01G295600.1	Wheat	nucleus	63.47	62.61
TraesCS7A01G177900.1	Wheat	nucleus	64.84	61.74
TraesCS7D01G179700.1	Wheat	nucleus	64.84	61.74
Solyc03g094040.2.1	Tomato	mitochondrion	42.47	60.78
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	28.31	60.19
Zm00001d052198_P002	Maize	nucleus	70.32	57.89
Zm00001d044869_P001	Maize	nucleus	69.86	56.04
Zm00001d018112_P004	Maize	nucleus	71.23	54.74
Solyc03g094090.2.1	Tomato	nucleus	22.37	46.67
Solyc03g094060.2.1	Tomato	cytosol	42.92	31.86
Solyc01g086980.2.1	Tomato	nucleus	28.77	9.39

Protein Annotations

EnsemblPlants:Solyc11g009090.1.1	EnsemblPlantsGene:Solyc11g009090.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
ncoils:Coil	PANTHER:PTHR43987	PANTHER:PTHR43987:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002769382	UniProt:K4D5G9	MapMan:16.2.1.1.2	:

Description

No Description!

Coordinates

chr11:-:3204621..3209644

Molecular Weight (calculated)

25038.4 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.842

Length

219 amino acids

Sequence
(BLAST)

001: MDEEEHEVYG GEIPIEGDME PHGADVDMAT ADDDAVKELD EMKKRLKEME DEAAALREMQ AKVEKEMGSV QDDPASTAAS QENREELDSR SIFVGNVDYA
101: CTPEEVQQHF QACGTVNRVT ILTDKFGQPK GFAYVEFIEQ EAVQEALQLN ESELHGRQLK VMPKRTNVPG MKQFRPGRFN PYLGGYRSRR PYAAPYFYSP
201: YGYGKVPRFR RPGRFMPYY

Best Arabidopsis Sequence Match ( AT5G10350.1 )
(BLAST)

001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ

Arabidopsis Description

PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.