Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G177900.1 | Wheat | nucleus | 97.83 | 97.83 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 85.22 | 93.78 |
| EER88092 | Sorghum | nucleus | 76.52 | 86.7 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 75.22 | 85.22 |
| Os06t0219600-01 | Rice | nucleus | 73.91 | 83.33 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 66.52 | 70.83 |
| KRH59303 | Soybean | nucleus | 66.09 | 70.7 |
| CDY37814 | Canola | nucleus | 46.96 | 69.23 |
| CDY33970 | Canola | nucleus | 63.04 | 68.72 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 64.35 | 68.52 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 63.48 | 67.59 |
| KRH43152 | Soybean | nucleus | 63.91 | 67.43 |
| Zm00001d044869_P001 | Maize | nucleus | 80.0 | 67.4 |
| CDY08805 | Canola | nucleus, plasma membrane | 63.48 | 66.36 |
| Bra024372.1-P | Field mustard | nucleus | 63.48 | 66.36 |
| PGSC0003DMT400041675 | Potato | nucleus | 62.61 | 66.06 |
| CDY55162 | Canola | nucleus | 63.04 | 65.91 |
| AT5G65260.1 | Thale cress | nucleus | 63.04 | 65.91 |
| AT5G10350.1 | Thale cress | nucleus | 61.3 | 64.98 |
| Solyc11g009090.1.1 | Tomato | nucleus | 61.74 | 64.84 |
| PGSC0003DMT400043273 | Potato | nucleus | 60.0 | 63.89 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 59.13 | 61.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.78 | 60.58 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 26.52 | 59.8 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 26.52 | 59.8 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 53.91 | 58.49 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 29.13 | 54.92 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 18.7 | 44.79 |
| TraesCS1D01G218400.1 | Wheat | nucleus | 38.26 | 42.93 |
| Solyc03g094090.2.1 | Tomato | nucleus | 19.13 | 41.9 |
| TraesCS2D01G332600.2 | Wheat | nucleus | 27.39 | 9.1 |
| TraesCS7D01G243800.1 | Wheat | nucleus | 25.65 | 8.48 |
| TraesCS2D01G271900.2 | Wheat | nucleus | 21.74 | 7.76 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G179700.1 | EnsemblPlantsGene:TraesCS7D01G179700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR43987 | PANTHER:PTHR43987:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:cd12306 | MapMan:16.2.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:133199583..133204444
Molecular Weight (calculated)
25281.5 Da
IEP (calculated)
4.763
GRAVY (calculated)
-0.792
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEEHEVYG QEIPVDGEDV DMGAGGDDAA KVRDAPVAAA ATRPAPLSRS RTPNPNAGTD PIRVQLHELD EMKRRLKEME EEAAALREMQ AKVAKEMQGG
101: DPNATTSEAK EEMDSRSVFV GNVDYACTPE EVQQHFNSCG TVNRVTILTD KFGQPKGFAY VEFVEAEAIQ EAVKLSESEL HGRQIKVAPK RTNVPGLKQP
201: RGGRGFNPYG GHPYMRPYPP PFYNPYGGYG
101: DPNATTSEAK EEMDSRSVFV GNVDYACTPE EVQQHFNSCG TVNRVTILTD KFGQPKGFAY VEFVEAEAIQ EAVKLSESEL HGRQIKVAPK RTNVPGLKQP
201: RGGRGFNPYG GHPYMRPYPP PFYNPYGGYG
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Arabidopsis Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.