Factsheet for TraesCS4D01G091300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G074000.1
TraesCS3B01G088300.3
TraesCS3D01G073700.1
TraesCS4A01G258200.3
TraesCS4B01G056200.1
TraesCS4D01G056600.1
TraesCS5A01G392400.1
TraesCS5B01G397200.1
TraesCS5D01G402200.1
TraesCS6A01G316300.1
TraesCS6B01G346800.2
TraesCS6D01G295600.1
TraesCS7A01G177900.1
TraesCS7B01G083600.1
TraesCS7D01G179700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	TraesCS3A01G074000.1	AT1G17760.1	12379796
AT1G71800.1	TraesCS3B01G088300.3	AT1G17760.1	12379796
AT1G71800.1	TraesCS3D01G073700.1	AT1G17760.1	12379796
AT1G71800.1	TraesCS3A01G074000.1	AT1G17760.1	18479511
AT1G71800.1	TraesCS3B01G088300.3	AT1G17760.1	18479511
AT1G71800.1	TraesCS3D01G073700.1	AT1G17760.1	18479511
AT1G71800.1	TraesCS6A01G316300.1	AT5G10350.1	18479511
AT1G71800.1	TraesCS6B01G346800.2	AT5G10350.1	18479511
AT1G71800.1	TraesCS6D01G295600.1	AT5G10350.1	18479511
AT1G71800.1	TraesCS7A01G177900.1	AT5G10350.1	18479511
AT1G71800.1	TraesCS7B01G083600.1	AT5G10350.1	18479511
AT1G71800.1	TraesCS7D01G179700.1	AT5G10350.1	18479511
AT1G71800.1	TraesCS4A01G258200.3	AT5G58040.1	18479511
AT1G71800.1	TraesCS4B01G056200.1	AT5G58040.1	18479511
AT1G71800.1	TraesCS4D01G056600.1	AT5G58040.1	18479511
AT1G71800.1	TraesCS5A01G392400.1	AT5G60940.1	18479511
AT1G71800.1	TraesCS5B01G397200.1	AT5G60940.1	18479511
AT1G71800.1	TraesCS5D01G402200.1	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G094500.1	Wheat	nucleus	98.98	98.98
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	94.08	86.65
KXG27890	Sorghum	cytosol	79.8	79.8
Os11t0176100-01	Rice	nucleus	78.16	77.37
Zm00001d004779_P001	Maize	nucleus	77.14	76.99
Zm00001d053041_P002	Maize	cytosol	78.37	65.87
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	24.9	54.22
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	32.86	53.49
GSMUA_Achr10P...	Banana	nucleus	40.41	51.16
KRG91748	Soybean	nucleus	46.12	40.94
Bra007985.1-P	Field mustard	nucleus	37.55	40.8
CDY03684	Canola	nucleus	37.55	40.8
AT1G71800.1	Thale cress	nucleus	38.37	40.78
KRH35025	Soybean	nucleus	45.31	40.73
CDX68301	Canola	cytosol, nucleus, plastid	37.76	40.22
CDY36682	Canola	cytosol, nucleus, plastid	37.76	40.22
Solyc02g069160.2.1	Tomato	nucleus	41.63	40.08
PGSC0003DMT400026767	Potato	nucleus	40.82	39.29
Bra003913.1-P	Field mustard	plastid	37.55	37.78
VIT_18s0001g01800.t01	Wine grape	nucleus	41.22	37.06
TraesCS7D01G417300.1	Wheat	plastid	16.73	35.96
TraesCS2D01G215500.1	Wheat	nucleus	16.73	35.65
TraesCS2D01G215900.1	Wheat	nucleus	16.33	34.78
CDY37934	Canola	nucleus	36.53	31.85
PGSC0003DMT400033572	Potato	plastid	25.31	30.54
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.02	25.0

Protein Annotations

Gene3D:1.10.20.70	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge	InterPro:CSTF_C
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031047	GO:GO:0031123
GO:GO:0031124	GO:GO:0040007	GO:GO:0042868	GO:GO:0045892	GO:GO:0048589	GO:GO:0060968
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR038192	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS4D01G091300	EnsemblPlants:TraesCS4D01G091300.1	TIGR:cd12671	SEG:seg

Description

No Description!

Coordinates

chr4D:+:66300546..66305975

Molecular Weight (calculated)

52995.1 Da

IEP (calculated)

6.763

GRAVY (calculated)

-0.467

Length

490 amino acids

Sequence
(BLAST)

001: MAAAPAGPQN RCVFVGNIPY DATEEQLVQI CEEVGPVVSF RLVVDKETGK PKGYGFCEYK DEETALSARR NLQGHDVNGR QLRVDFAENG RNTDRNREKG
101: RGGPGMSSTV DAQKQLTTTP AVGDTSLHQL IGLPPAIHAA SVMAGVLGGA QTANVQNGLP VQFGLGNDPL THYLARMSRH QLYQIMSELK TLTTQNNDLA
201: KKLLQGIPQL PKALFQAQIM LGLVTPQMMQ MAKSQQPSSS LAQSSHLNES FPQPDAVLPI VHRPPPNPNA MQEQTAPLHN FPQYQHSSQP PVKMFPHGHQ
301: PGVLAHPPML SQPFGTSSSV PTQPLVNSGG LISQVQPSFL TQHPRPPVMP TNVQQLPLTN PHLPQVGAEP EILPNEIRLP DRASHQAELD HPSKLRKLED
401: GTSTPGIVNN SPAVYSAPSQ VVVPTGPSGS YSSGAVHFQQ PENEAPQLTQ DDESALLQQV LQLTPEQLSS LPVEQQQQVL QLQKMLSAGK

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.