Factsheet for TraesCS5D01G402200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G094500.1
TraesCS4D01G091300.1
TraesCS5A01G453700.5
TraesCS5B01G462500.2
TraesCS5D01G464200.1
TraesCS7A01G461800.1
TraesCS7B01G363200.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	TraesCS7A01G461800.1	AT1G30460.1	18479511
AT5G60940.1	TraesCS7B01G363200.2	AT1G30460.1	18479511
AT5G60940.1	TraesCS7D01G450100.1	AT1G30460.1	18479511
AT5G60940.1	TraesCS4B01G094500.1	AT1G71800.1	18479511
AT5G60940.1	TraesCS4D01G091300.1	AT1G71800.1	18479511
AT5G60940.1	TraesCS5A01G453700.5	AT5G23880.1	18479511
AT5G60940.1	TraesCS5B01G462500.2	AT5G23880.1	18479511
AT5G60940.1	TraesCS5D01G464200.1	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G392400.1	Wheat	cytosol	96.4	94.81
TraesCS5B01G397200.1	Wheat	cytosol	96.4	94.37
HORVU5Hr1G095960.3	Barley	cytosol	95.44	94.09
Os03t0754900-02	Rice	cytosol	83.93	80.65
KXG37531	Sorghum	cytosol	81.77	80.61
Zm00001d034054_P002	Maize	cytosol	80.1	74.72
GSMUA_Achr6P35010_001	Banana	cytosol	59.47	74.25
PGSC0003DMT400059810	Potato	cytosol	28.54	72.56
Solyc12g038540.1.1	Tomato	cytosol	10.79	69.23
KRH54731	Soybean	cytosol, nucleus	66.67	65.41
KRH63183	Soybean	cytosol	48.2	62.62
AT5G60940.1	Thale cress	cytosol	63.07	61.31
VIT_17s0000g05080.t01	Wine grape	cytosol	69.78	60.12
CDY58694	Canola	cytosol	62.35	60.05
CDY02182	Canola	cytosol	60.19	59.9
Bra012994.1-P	Field mustard	cytosol	59.95	55.93
Solyc12g038530.1.1	Tomato	cytosol	38.61	54.03
Solyc12g038550.1.1	Tomato	plastid	25.42	39.11

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS5D01G402200	EnsemblPlants:TraesCS5D01G402200.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:+:467778002..467782226

Molecular Weight (calculated)

45481.7 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.255

Length

417 amino acids

Sequence
(BLAST)

001: MDAAVQEAKL LRQVNALIVA HLRDQNLTQA ATAVAAATMT PRADASVPNH LLRLVAKGLA VEQEEAARGG GAPAAAGLAR PLGTNAVDFS VQNVRGPSKT
101: FPKHETRHIS DHKNVARCAK FSPDGKYFAT GSGDTSIKFF EVSKIKQTML GDSKESSGRP VVRTFYDHVQ PINDLDFHPI SPILISGAKD NTIKFFDFSK
201: TAARKAFRVI QDTHNVRSVC FHPCGDYILA GTDHPVAHLY DVNTFTCFLS ANPQDSSAAI NQVRYSGTGS MYVTASKDGS LRIWDGVSAE CVRPIIGAHG
301: SVEATSAIFT KDERYILSSG KDSCIKLWEV GTGRLVKQYP GAVNTQFRCQ AVFNETEEFV LSTDEQNNEV VVWDALTSER VARLPSGHTG APRWLEHSPV
401: EPVFVTCGND RSVRFWK

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.