Factsheet for AT5G60940.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58694	Canola	cytosol	90.21	89.38
CDY02182	Canola	cytosol	86.95	89.02
Bra012994.1-P	Field mustard	cytosol	86.48	83.0
Solyc12g038540.1.1	Tomato	cytosol	10.96	72.31
PGSC0003DMT400059810	Potato	cytosol	27.27	71.34
GSMUA_Achr6P35010_001	Banana	cytosol	53.85	69.16
KRH54731	Soybean	cytosol, nucleus	67.13	67.76
TraesCS5D01G402200.1	Wheat	cytosol	61.31	63.07
KRH63183	Soybean	cytosol	47.09	62.93
KXG37531	Sorghum	cytosol	61.54	62.41
TraesCS5A01G392400.1	Wheat	cytosol	60.84	61.56
TraesCS5B01G397200.1	Wheat	cytosol	61.07	61.5
HORVU5Hr1G095960.3	Barley	cytosol	60.61	61.47
Os03t0754900-02	Rice	cytosol	61.77	61.06
VIT_17s0000g05080.t01	Wine grape	cytosol	67.37	59.71
Zm00001d034054_P002	Maize	cytosol	60.84	58.39

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	EntrezGene:836215	UniProt:A0A178UNF1	ProteinID:AED97399.1	ProteinID:AED97400.1
EMBL:AF515696	ArrayExpress:AT5G60940	EnsemblPlantsGene:AT5G60940	RefSeq:AT5G60940	TAIR:AT5G60940	RefSeq:AT5G60940-TAIR-G
EnsemblPlants:AT5G60940.1	TAIR:AT5G60940.1	EMBL:AY084766	EMBL:AY136384	ProteinID:BAB10643.1	EMBL:BT000184
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_200902.1	RefSeq:NP_974972.1	ProteinID:OAO95338.1
PFAM:PF00400	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1
UniProt:Q8L4J2	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000005EC36	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]

Coordinates

chr5:+:24522953..24526113

Molecular Weight (calculated)

47067.7 Da

IEP (calculated)

9.126

GRAVY (calculated)

-0.253

Length

429 amino acids

Sequence
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.