Factsheet for GSMUA_Achr6P35010_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P15280_001
GSMUA_Achr6P17820_001
GSMUA_Achr6P19820_001
GSMUA_Achr9P30440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT5G60940.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT5G60940.1	GSMUA_Achr10P...	AT1G71800.1	18479511
AT5G60940.1	GSMUA_Achr6P17820_001	AT1G71800.1	18479511
AT5G60940.1	GSMUA_Achr1P15280_001	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g038540.1.1	Tomato	cytosol	14.67	75.38
PGSC0003DMT400059810	Potato	cytosol	36.53	74.39
KRH63183	Soybean	cytosol	64.97	67.6
KRH54731	Soybean	cytosol, nucleus	77.84	61.18
TraesCS5D01G402200.1	Wheat	cytosol	74.25	59.47
TraesCS5B01G397200.1	Wheat	cytosol	74.55	58.45
HORVU5Hr1G095960.3	Barley	cytosol	73.95	58.39
TraesCS5A01G392400.1	Wheat	cytosol	73.95	58.25
Os03t0754900-02	Rice	cytosol	75.15	57.83
KXG37531	Sorghum	cytosol	73.05	57.68
VIT_17s0000g05080.t01	Wine grape	cytosol	80.54	55.58
AT5G60940.1	Thale cress	cytosol	69.16	53.85
Zm00001d034054_P002	Maize	cytosol	71.26	53.24
CDY02182	Canola	cytosol	66.77	53.22
CDY58694	Canola	cytosol	67.07	51.73
Bra012994.1-P	Field mustard	cytosol	66.77	49.89
Solyc12g038530.1.1	Tomato	cytosol	38.32	42.95
Solyc12g038550.1.1	Tomato	plastid	29.94	36.9

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G35010_001	EnsemblPlants:GSMUA_Achr6P35010_001	EnsemblPlants:GSMUA_Achr6T35010_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0TCU4	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029682A8	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

Putative Cleavage stimulation factor subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35010_001]

Coordinates

chr6:-:33367540..33376199

Molecular Weight (calculated)

37330.0 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.320

Length

334 amino acids

Sequence
(BLAST)

001: MPETKGSSKT FPKHETRHVS EHKNFARCAR FSPDGRFVAT GSSDTSIKLF EVSKMKQAVL ADSRDGPVRP VIRTFYDHSQ PINDLDFHPQ STVLISGAKD
101: NTIKFFDFSK TVARRAFRVI QDTHNVRSVS FHPSGEYLLA GTDHPIPHLY DINTFKCYLT ANAHDLNAKA AINQAWVRYS STGSMYVTAS KDGSIRVWDG
201: VTAQCVRPIV GAHGLMEATS ASFTKDQRFI LSCGKDSTIK LWEVGTGRLL KQYVGAVHTQ FRCQAVFNGT EEFILSIDES SNEVVIWDAL TAEKVAIWPS
301: NHVAAPRWIE HSPTEAAFVT CGNDRSVRFW KEIP

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.