Factsheet for Zm00001d034054_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004779_P001
Zm00001d007684_P001
Zm00001d014378_P001
Zm00001d014379_P001
Zm00001d036594_P001
Zm00001d036595_P001
Zm00001d044552_P006
Zm00001d053041_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	Zm00001d014378_P001	AT1G30460.1	18479511
AT5G60940.1	Zm00001d014379_P001	AT1G30460.1	18479511
AT5G60940.1	Zm00001d036594_P001	AT1G30460.1	18479511
AT5G60940.1	Zm00001d036595_P001	AT1G30460.1	18479511
AT5G60940.1	Zm00001d004779_P001	AT1G71800.1	18479511
AT5G60940.1	Zm00001d007684_P001	AT1G71800.1	18479511
AT5G60940.1	Zm00001d053041_P002	AT1G71800.1	18479511
AT5G60940.1	Zm00001d044552_P006	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37531	Sorghum	cytosol	90.6	95.74
HORVU5Hr1G095960.3	Barley	cytosol	76.73	81.09
TraesCS5D01G402200.1	Wheat	cytosol	74.72	80.1
Os03t0754900-02	Rice	cytosol	77.63	79.95
TraesCS5A01G392400.1	Wheat	cytosol	75.62	79.72
TraesCS5B01G397200.1	Wheat	cytosol	75.62	79.34
GSMUA_Achr6P35010_001	Banana	cytosol	53.24	71.26
PGSC0003DMT400059810	Potato	cytosol	25.06	68.29
Solyc12g038540.1.1	Tomato	cytosol	9.62	66.15
KRH54731	Soybean	cytosol, nucleus	62.64	65.88
KRH63183	Soybean	cytosol	44.07	61.37
AT5G60940.1	Thale cress	cytosol	58.39	60.84
CDY58694	Canola	cytosol	57.49	59.35
CDY02182	Canola	cytosol	55.48	59.19
VIT_17s0000g05080.t01	Wine grape	cytosol	63.31	58.47
Bra012994.1-P	Field mustard	cytosol	55.48	55.48
Solyc12g038530.1.1	Tomato	cytosol	34.23	51.34
Solyc12g038550.1.1	Tomato	plastid	22.37	36.9

Protein Annotations

EntrezGene:100192488	MapMan:16.2.1.3.3	Gene3D:2.130.10.10	UniProt:A0A1D6L506	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM09440.1	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000842B458	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d034054	EnsemblPlants:Zm00001d034054_P002	EnsemblPlants:Zm00001d034054_T002	SEG:seg	:

Description

Cleavage stimulation factor subunit 50

Coordinates

chr1:+:282590171..282597565

Molecular Weight (calculated)

48529.2 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.167

Length

447 amino acids

Sequence
(BLAST)

001: MNEAVQEAKL LRQVNALIVA HLRSQNLGQA AAAVAAATMT PISAAESVPA NHLLRLVAKG LAAEHGGGDA ASAFDSAGFG VAVQPPGSSA VDFSIQDVKG
101: SSKSFPKHEV KHVSDHKNAA RCVKFSPDGK YFATGSADTS IKFFEVAKIK QTMVGDSKDG PARPVVRTFY DHTQAINDLD FHPESPILIS AAKDSTIRFF
201: DFSKTNARKA FRVIQVVNSS KPIYLYIMLN SSFVNAGQDT HNVRSVCFHP CGDYLLAGTD HPVAHLYDIN TFTCYLSANA QDSSSPINQV RYSCTGSLYV
301: TASKDGSLRI WDGVSAECVR PIIGAHGSSE AISAIFTKDE RYVLSCGKDS RVKLWEVGTG RLVKQYAGAI RRQFRCQAVF NETEEFVLSV DEQNNEVVVW
401: DALTAEKVTR LPSGSTGAPR WLDHSPVEPV FVSCGNDRSI KFWKQTV

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.