Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g05080.t01 | Wine grape | cytosol | 64.43 | 39.67 |
| TraesCS5D01G402200.1 | Wheat | cytosol | 54.03 | 38.61 |
| TraesCS5B01G397200.1 | Wheat | cytosol | 55.03 | 38.5 |
| GSMUA_Achr6P35010_001 | Banana | cytosol | 42.95 | 38.32 |
| TraesCS5A01G392400.1 | Wheat | cytosol | 54.03 | 37.97 |
| HORVU5Hr1G095960.3 | Barley | cytosol | 53.69 | 37.83 |
| Os03t0754900-02 | Rice | cytosol | 54.03 | 37.1 |
| KXG37531 | Sorghum | cytosol | 51.34 | 36.17 |
| Zm00001d034054_P002 | Maize | cytosol | 51.34 | 34.23 |
| Solyc12g038550.1.1 | Tomato | plastid | 9.06 | 9.96 |
| Solyc12g038540.1.1 | Tomato | cytosol | 1.01 | 4.62 |
Protein Annotations
| EnsemblPlants:Solyc12g038530.1.1 | EnsemblPlantsGene:Solyc12g038530.1 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | PANTHER:PTHR44133 | PANTHER:PTHR44133:SF1 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000276A4D2 | UniProt:K4DEK2 | MapMan:16.2.1.3.3 | : |
Description
No Description!
Coordinates
chr12:-:47346122..47353224
Molecular Weight (calculated)
32997.4 Da
IEP (calculated)
10.117
GRAVY (calculated)
-0.357
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNHNNDNL EHKLQAGKLF RHVNSLIVAH LRDNNLNQAA SAVASSTMTP MNVEAPPNKL LELVAKGLAV DKDDTLRGVS TAIPFDPIVT AGYGSIPAPR
101: AAYVDFSSMN NTKGPSKNIP KHESRHISEH KNVARCARFS PDGRFLATGS ADTSIKLFEI VKVKQMKQPE ARDGPVRPVV RTFYDHQQPI NDLDFHPQNT
201: VLISGSKDRT IKFFDFSKAV AKRAFRVIQD THNVRSVSFH PSGDYLLAGN FCTTKHNEYG RYMSIVAINV GGRSVIIIPE PVLNAGWYNL AFKIEKLH
101: AAYVDFSSMN NTKGPSKNIP KHESRHISEH KNVARCARFS PDGRFLATGS ADTSIKLFEI VKVKQMKQPE ARDGPVRPVV RTFYDHQQPI NDLDFHPQNT
201: VLISGSKDRT IKFFDFSKAV AKRAFRVIQD THNVRSVSFH PSGDYLLAGN FCTTKHNEYG RYMSIVAINV GGRSVIIIPE PVLNAGWYNL AFKIEKLH
001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV
Arabidopsis Description
CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.