Factsheet for Solyc12g038540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021760.2.1
Solyc02g069160.2.1
Solyc02g070240.2.1
Solyc03g025540.2.1
Solyc09g065080.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	Solyc02g021760.2.1	AT1G30460.1	18479511
AT5G60940.1	Solyc02g070240.2.1	AT1G30460.1	18479511
AT5G60940.1	Solyc02g069160.2.1	AT1G71800.1	18479511
AT5G60940.1	Solyc09g065080.1.1	AT1G71800.1	18479511
AT5G60940.1	Solyc03g025540.2.1	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35010_001	Banana	cytosol	75.38	14.67
KRH63183	Soybean	cytosol	69.23	14.02
KRH54731	Soybean	cytosol, nucleus	75.38	11.53
CDY02182	Canola	cytosol	73.85	11.46
AT5G60940.1	Thale cress	cytosol	72.31	10.96
CDY58694	Canola	cytosol	72.31	10.85
TraesCS5D01G402200.1	Wheat	cytosol	69.23	10.79
VIT_17s0000g05080.t01	Wine grape	cytosol	80.0	10.74
Bra012994.1-P	Field mustard	cytosol	73.85	10.74
HORVU5Hr1G095960.3	Barley	cytosol	69.23	10.64
TraesCS5B01G397200.1	Wheat	cytosol	69.23	10.56
KXG37531	Sorghum	cytosol	67.69	10.4
TraesCS5A01G392400.1	Wheat	cytosol	67.69	10.38
Os03t0754900-02	Rice	cytosol	67.69	10.14
Zm00001d034054_P002	Maize	cytosol	66.15	9.62
Solyc12g038550.1.1	Tomato	plastid	12.31	2.95
Solyc12g038530.1.1	Tomato	cytosol	4.62	1.01

Protein Annotations

EnsemblPlants:Solyc12g038540.1.1	EnsemblPlantsGene:Solyc12g038540.1	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	PFscan:PS50082	PFscan:PS50294	SUPFAM:SSF50978
UniParc:UPI000276A4D3	UniProt:K4DEK3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:-:47338374..47338795

Molecular Weight (calculated)

6735.8 Da

IEP (calculated)

8.506

GRAVY (calculated)

-0.180

Length

65 amino acids

Sequence
(BLAST)

1: MGVNSAINQV RYSSTGGMYV TASKDGAIRL WDGVTASCVR SIDGAHGAAE ATSANFTKDQ RVGNL

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.