CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91748
KRH08941
KRH11760
KRH30256
KRH30262
KRH35025
KRH36762
KRH38460

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	KRH11760	AT1G30460.1	18479511
AT5G60940.1	KRH36762	AT1G30460.1	18479511
AT5G60940.1	KRG91748	AT1G71800.1	18479511
AT5G60940.1	KRH35025	AT1G71800.1	18479511
AT5G60940.1	KRH08941	AT5G23880.1	18479511
AT5G60940.1	KRH30256	AT5G23880.1	18479511
AT5G60940.1	KRH30262	AT5G23880.1	18479511
AT5G60940.1	KRH38460	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059810	Potato	cytosol	37.38	73.17
Solyc12g038540.1.1	Tomato	cytosol	14.02	69.23
KRH54731	Soybean	cytosol, nucleus	90.34	68.24
GSMUA_Achr6P35010_001	Banana	cytosol	67.6	64.97
VIT_17s0000g05080.t01	Wine grape	cytosol	72.9	48.35
TraesCS5D01G402200.1	Wheat	cytosol	62.62	48.2
TraesCS5A01G392400.1	Wheat	cytosol	62.93	47.64
HORVU5Hr1G095960.3	Barley	cytosol	62.62	47.52
TraesCS5B01G397200.1	Wheat	cytosol	62.93	47.42
Os03t0754900-02	Rice	cytosol	63.86	47.23
AT5G60940.1	Thale cress	cytosol	62.93	47.09
KXG37531	Sorghum	cytosol	61.99	47.04
CDY02182	Canola	cytosol	61.37	47.02
CDY58694	Canola	cytosol	62.31	46.19
Bra012994.1-P	Field mustard	cytosol	61.68	44.3
Zm00001d034054_P002	Maize	cytosol	61.37	44.07

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	UniProt:A0A0R0KK04	EMBL:ACUP02002638	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_04G160300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH63183	ProteinID:KRH63183	ProteinID:KRH63183.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0006ED7022	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

hypothetical protein

Coordinates

chr4:+:39737018..39741052

Molecular Weight (calculated)

35941.7 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.156

Length

321 amino acids

Sequence
(BLAST)

001: MWNINSFYLI IFSSEKGDIA RGTDFTATLP LPHTTAIDFR FPKSFLKHET RHLSEHKNIA RCARFSADGR FVATGSADTS IKLFEVSKIK QMLLPEAKDG
101: PVRPIIRTYY DHIQDTHNVR SVSFHPSGDF LLAGTDHAIP HLYDINTFQC YLSANIPDTS PSGAINQAYI LVGSMYVTAS KDGAIRLWDG ITANCVRSIT
201: AAHGTAEATS AIFTKDHRFI LSCGKDSTIK LWEVGSGRLI KQYLGAMHTQ LRCQAIFNET EEFILSIDEL SNEIVIWDAI TTEKVAKWPS NHVGAPRWLE
301: HSPIESAFIS CGTDRSVRFW K

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.