Factsheet for PGSC0003DMT400059810

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026767
PGSC0003DMT400033572
PGSC0003DMT400054373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	PGSC0003DMT400054373	AT1G30460.1	18479511
AT5G60940.1	PGSC0003DMT400026767	AT1G71800.1	18479511
AT5G60940.1	PGSC0003DMT400033572	AT1G71800.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g038550.1.1	Tomato	plastid	65.85	39.85
KRH63183	Soybean	cytosol	73.17	37.38
GSMUA_Achr6P35010_001	Banana	cytosol	74.39	36.53
KRH54731	Soybean	cytosol, nucleus	75.61	29.18
TraesCS5D01G402200.1	Wheat	cytosol	72.56	28.54
HORVU5Hr1G095960.3	Barley	cytosol	71.95	27.9
TraesCS5B01G397200.1	Wheat	cytosol	71.95	27.7
TraesCS5A01G392400.1	Wheat	cytosol	70.73	27.36
AT5G60940.1	Thale cress	cytosol	71.34	27.27
VIT_17s0000g05080.t01	Wine grape	cytosol	80.49	27.27
CDY02182	Canola	cytosol	68.9	26.97
KXG37531	Sorghum	cytosol	69.51	26.95
CDY58694	Canola	cytosol	69.51	26.33
Os03t0754900-02	Rice	cytosol	68.29	25.81
Bra012994.1-P	Field mustard	cytosol	69.51	25.5
Zm00001d034054_P002	Maize	cytosol	68.29	25.06

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1C4S1	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400023259
PGSC:PGSC0003DMG400023259	EnsemblPlants:PGSC0003DMT400059810	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296CF79	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

Cleavage stimulation factor 50 kDa subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400023259]

Coordinates

chr12:-:29224066..29230978

Molecular Weight (calculated)

17973.0 Da

IEP (calculated)

6.097

GRAVY (calculated)

-0.170

Length

164 amino acids

Sequence
(BLAST)

001: MGVNGAINQV RYSSTGGMYV TASKDGAIRL WDGVTASCVR SIDGAHGAAE ATSANFTKDQ RYILSSAKDS SVKLWEVGTG RLVKQYLGAT HTQLRCQAVF
101: NDTEEFVLSI DESLNEIVAW DSLTTEIVAR WPSNHIGAPR WLEYSPVEAA FVSCGIDRSI RHWT

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.