Factsheet for PGSC0003DMT400026767

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008250
PGSC0003DMT400041675
PGSC0003DMT400043273
PGSC0003DMT400059810

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	PGSC0003DMT400041675	AT5G10350.1	18479511
AT1G71800.1	PGSC0003DMT400043273	AT5G10350.1	18479511
AT1G71800.1	PGSC0003DMT400008250	AT5G58040.1	18479511
AT1G71800.1	PGSC0003DMT400059810	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069160.2.1	Tomato	nucleus	93.12	93.12
PGSC0003DMT400033572	Potato	plastid	54.22	67.98
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	29.86	50.5
KRH35025	Soybean	nucleus	47.94	44.77
GSMUA_Achr10P...	Banana	nucleus	33.99	44.7
AT1G71800.1	Thale cress	nucleus	40.08	44.25
KRG91748	Soybean	nucleus	47.54	43.84
CDY36682	Canola	cytosol, nucleus, plastid	39.29	43.48
KXG27890	Sorghum	cytosol	41.85	43.47
Bra007985.1-P	Field mustard	nucleus	38.11	43.02
CDY03684	Canola	nucleus	38.11	43.02
CDX68301	Canola	cytosol, nucleus, plastid	38.51	42.61
Zm00001d004779_P001	Maize	nucleus	41.06	42.57
Os11t0176100-01	Rice	nucleus	40.86	42.02
VIT_18s0001g01800.t01	Wine grape	nucleus	43.81	40.92
TraesCS4B01G094500.1	Wheat	nucleus	39.29	40.82
TraesCS4D01G091300.1	Wheat	nucleus	39.29	40.82
Bra003913.1-P	Field mustard	plastid	38.7	40.45
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	39.69	37.97
Zm00001d053041_P002	Maize	cytosol	41.45	36.19
CDY37934	Canola	nucleus	38.11	34.52
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.81	25.46

Protein Annotations

Gene3D:1.10.20.70	EntrezGene:102583587	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge
InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR038192	UniProt:M1ANQ3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304	PFAM:PF14327
EnsemblPlantsGene:PGSC0003DMG400010340	PGSC:PGSC0003DMG400010340	EnsemblPlants:PGSC0003DMT400026767	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295B9C8	RefSeq:XP_006362619.1
SEG:seg	:	:	:	:	:

Description

MRNA splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400010340]

Coordinates

chr2:+:28162959..28169756

Molecular Weight (calculated)

55034.6 Da

IEP (calculated)

8.110

GRAVY (calculated)

-0.439

Length

509 amino acids

Sequence
(BLAST)

001: MATSDSQRRR VFVGNIPYDA TEEQLMQICE EVGPVVSFRL VIDKETGKPK GYGFCEYKDE ETALSARRNL QRYEINGRQL RVDFAEKDKS SDRNREQGCG
101: GPGMTANVDH QKYIGGPAVP VDSALQQPLG MSVAMTAAAV MAGALGAAQS GCSFSQSGID PLTLHMSKLS RSQLNDVMSE FKAMCTQNKE QTRQLLLAIP
201: NLSKALFLAQ LILGMLTQPM LQTPNIRQSA APKLQPLALD SQQSQQLATQ SLLGLPPLPP SSLPQAQPQT QLAQSQNQVL QSQLPKPSRN PSINATQVNV
301: SINPPVPVGT SVAVKQQMQP FFLQQAGPVA SMNFTYDSQL GTEKTRYHPP PSSMHTPSLE QGSQGNPSVV SGVLDNMNKD SRRPHAPNNS SLITRPAYPS
401: GLPEVKRGAA YNLDLLSRPS KTARLNDGIS YALPDASVST PQSGCSTQVL SAAEMSNADK QATQVQLPSD VESALLQQVL SLTPEQLSAL PPDQQQQVIQ
501: LQQMLRQPT

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.