Factsheet for VIT_18s0001g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0037g00130.t01
VIT_11s0065g00710.t01
VIT_17s0000g05080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	VIT_11s0065g00710.t01	AT1G17760.1	12379796
AT1G71800.1	VIT_11s0065g00710.t01	AT1G17760.1	18479511
AT1G71800.1	VIT_11s0037g00130.t01	AT5G58040.1	18479511
AT1G71800.1	VIT_17s0000g05080.t01	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	26.97	65.33
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	29.91	54.15
KRH35025	Soybean	nucleus	49.54	49.54
KRG91748	Soybean	nucleus	49.54	48.91
GSMUA_Achr10P...	Banana	nucleus	34.68	48.84
CDY36682	Canola	cytosol, nucleus, plastid	39.27	46.52
AT1G71800.1	Thale cress	nucleus	39.08	46.2
Bra007985.1-P	Field mustard	nucleus	38.17	46.12
CDY03684	Canola	nucleus	38.17	46.12
CDX68301	Canola	cytosol, nucleus, plastid	38.9	46.09
Solyc02g069160.2.1	Tomato	nucleus	41.83	44.79
PGSC0003DMT400026767	Potato	nucleus	40.92	43.81
Bra003913.1-P	Field mustard	plastid	38.72	43.33
Zm00001d004779_P001	Maize	nucleus	37.98	42.16
KXG27890	Sorghum	cytosol	37.8	42.04
Os11t0176100-01	Rice	nucleus	38.17	42.02
TraesCS4D01G091300.1	Wheat	nucleus	37.06	41.22
TraesCS4B01G094500.1	Wheat	nucleus	36.7	40.82
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	37.06	37.97
CDY37934	Canola	nucleus	37.98	36.83
Zm00001d053041_P002	Maize	cytosol	37.25	34.82
PGSC0003DMT400033572	Potato	plastid	24.95	33.5
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.54	24.07

Protein Annotations

EntrezGene:100256296	wikigene:100256296	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	ProteinID:CCB52326	ProteinID:CCB52326.1
InterPro:CSTF2_hinge	UniProt:F6HJC7	EMBL:FN595772	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005847	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0040007	GO:GO:0042868	GO:GO:0045892
GO:GO:0048589	GO:GO:0060968	GO:GO:0098789	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100256296
wikigene:LOC100256296	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00021084EA
ArrayExpress:VIT_18s0001g01800	EnsemblPlantsGene:VIT_18s0001g01800	EnsemblPlants:VIT_18s0001g01800.t01	RefSeq:XP_002264617	RefSeq:XP_002264617.2	SEG:seg

Description

No Description!

Coordinates

chr18_random:-:2318221..2332606

Molecular Weight (calculated)

58512.0 Da

IEP (calculated)

10.216

GRAVY (calculated)

-0.535

Length

545 amino acids

Sequence
(BLAST)

001: MASSQHRCVF VGNIPYDATE EQLIQICEEV GPVVSFRLVI DRETGKPKGY GFCEYKDEET ALSARRNLQG YEINGRQLRV DFAENDKGAD RNREQGRGGP
101: GMVANVEPQK QVGGPAILGD AALHQPVGLP LAMAASSVMA GALGGAQAGS KSNQNGFQSQ AMLGSDPLTL HLAKMSRNQL NEVISDLKVM ATKNKELARQ
201: LLLTSPQLPK ALFQAQIMLG MVTPQVLQMP NIRQASVPPT QPVLQDGQQG QQLAVQTLSG LPPLAQSKMQ LGLMPKGQEG QVSAMPHNSL VHSQFSALPQ
301: QPAQPQIQLP PQGHNQALQQ ATFAGQSGVT ALPSVRPQPP AKLPVRPQIQ VASSSSLKHQ MQPPLLQQPG QFGSAKSGNN SQLVIPNATL RPTLMTRPSF
401: PDSGFQPGSS TFSSIPETTN NNADRSSQVT NNTYSNMPSG LSMKKSMARD TSEPMNHPSK MVKLDDGRRA PFSTVGLNLS TSSASASASG PSQVLGIGSV
501: SANQISKAEE VQHMDKKAPQ EMTKGYIDRK KEYKRRMKNP PTKEN

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.