CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94131
KRH12930
KRH37905
KRH43152
KRH54731
KRH59303
KRH63183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	KRG94131	AT1G17760.1	12379796
AT1G71800.1	KRG94131	AT1G17760.1	18479511
AT1G71800.1	KRH43152	AT5G10350.1	18479511
AT1G71800.1	KRH59303	AT5G10350.1	18479511
AT1G71800.1	KRH12930	AT5G58040.1	18479511
AT1G71800.1	KRH37905	AT5G58040.1	18479511
AT1G71800.1	KRH54731	AT5G60940.1	18479511
AT1G71800.1	KRH63183	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35025	Soybean	nucleus	93.3	94.5
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	26.27	64.44
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	29.17	53.49
CDX68301	Canola	cytosol, nucleus, plastid	41.49	49.78
VIT_18s0001g01800.t01	Wine grape	nucleus	48.91	49.54
AT1G71800.1	Thale cress	nucleus	41.3	49.46
CDY36682	Canola	cytosol, nucleus, plastid	40.76	48.91
Zm00001d004779_P001	Maize	nucleus	42.39	47.66
KXG27890	Sorghum	cytosol	42.21	47.55
GSMUA_Achr10P...	Banana	nucleus	33.33	47.55
PGSC0003DMT400026767	Potato	nucleus	43.84	47.54
Solyc02g069160.2.1	Tomato	nucleus	43.84	47.54
Bra007985.1-P	Field mustard	nucleus	38.77	47.45
CDY03684	Canola	nucleus	38.77	47.45
Os11t0176100-01	Rice	nucleus	42.03	46.87
Bra003913.1-P	Field mustard	plastid	40.94	46.41
TraesCS4B01G094500.1	Wheat	nucleus	41.12	46.33
TraesCS4D01G091300.1	Wheat	nucleus	40.94	46.12
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	42.03	43.61
Zm00001d053041_P002	Maize	cytosol	41.49	39.28
CDY37934	Canola	nucleus	38.59	37.9
PGSC0003DMT400033572	Potato	plastid	26.27	35.71
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.96	25.46

Protein Annotations

Gene3D:1.10.20.70	EntrezGene:100806489	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	EMBL:ACUP02012706	InterPro:CSTF2_C_sf
InterPro:CSTF2_hinge	InterPro:CSTF_C	EnsemblPlantsGene:GLYMA_20G172200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005847	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0031124	GO:GO:0098789	UniProt:I1NH73	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR038192
EnsemblPlants:KRG91748	ProteinID:KRG91748	ProteinID:KRG91748.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00023DC505	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:+:40987910..40995394

Molecular Weight (calculated)

59867.3 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.483

Length

552 amino acids

Sequence
(BLAST)

001: MATSQSQHRC VFVGNIPYDA TEEQLIEICQ EVGPVVSFRL VIDRETGKPK GYGFCEYKDE ETALSARRNL QGYEINGRQL RVDFAENDKG NDRNREQGRG
101: GPGMTTNVDH QKQVGVPAVH GEAVQHQPIG LHIAITAAAV MTAALGGAQF GIQSNQNSLQ SQSALAHDPL TLHLAKMSRS QLTEIISELK GMATQNKELA
201: RQLLLSRPQL PKALFQAQIM LGMVTSQVLQ MPNLRLVSDQ TSQSSMNEGQ LGQASLVQTL SGLPHGQDKL QPGLTPYAQE GQVNTIPHNP LVPSQLTAHP
301: KPPVQPRIPL QQNPNNLVLP GTLSGQSNLM LPSARSPGLG SLSVRPPIQL ATSTALNQQM HASLLQHSVH VGNSTVGHNV QKVRPDANFQ PGPSMSTTNS
401: QLLSKGDKSS KVIEDLNWAK RTNTYSKSNI PLGVEKTNMV RDSSESFTRP SKVMKLDEGR STPLSAGILD MPVTDGSSHI LGRSSLPVHA APKAEGQYSE
501: QQSSQLPPDV ESVLLQQVLN LTPEQLSSLP PDQQQQVLQL QQALRRDQIQ PS

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.