Factsheet for Bra003913.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra006786.1-P
Bra012994.1-P
Bra016588.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Bra016588.1-P	AT1G17760.1	12379796
AT1G71800.1	Bra016588.1-P	AT1G17760.1	18479511
AT1G71800.1	Bra002677.1-P	AT5G58040.1	18479511
AT1G71800.1	Bra006786.1-P	AT5G58040.1	18479511
AT1G71800.1	Bra012994.1-P	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68301	Canola	cytosol, nucleus, plastid	92.81	98.26
AT1G71800.1	Thale cress	nucleus	77.82	82.21
Bra007985.1-P	Field mustard	nucleus	68.17	73.61
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	26.9	58.22
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	30.6	49.5
GSMUA_Achr10P...	Banana	nucleus	32.85	41.34
KRG91748	Soybean	nucleus	46.41	40.94
KRH35025	Soybean	nucleus	45.59	40.73
Zm00001d004779_P001	Maize	nucleus	39.43	39.1
KXG27890	Sorghum	cytosol	39.22	38.98
Solyc02g069160.2.1	Tomato	nucleus	40.66	38.9
VIT_18s0001g01800.t01	Wine grape	nucleus	43.33	38.72
PGSC0003DMT400026767	Potato	nucleus	40.45	38.7
TraesCS4B01G094500.1	Wheat	nucleus	37.78	37.55
TraesCS4D01G091300.1	Wheat	nucleus	37.78	37.55
Os11t0176100-01	Rice	nucleus	37.99	37.37
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	38.19	34.96
Zm00001d053041_P002	Maize	cytosol	37.99	31.73
PGSC0003DMT400033572	Potato	plastid	23.2	27.83
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.09	25.0

Protein Annotations

MapMan:16.2.1.3.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra003913	EnsemblPlants:Bra003913.1	EnsemblPlants:Bra003913.1-P	InterPro:CSTF2_hinge
InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4CI80	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304	PFAM:PF14327	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002541879	SEG:seg	:	:	:	:

Description

AT1G71800 (E=6e-200) | cleavage stimulation factor, putative

Coordinates

chrA07:-:15719078..15721538

Molecular Weight (calculated)

53491.9 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.461

Length

487 amino acids

Sequence
(BLAST)

001: MASSSQRRCV FGTHSPLPPP FRFSFFWFSI VNLHRLFLVG NIPYDVTEEQ LRDICGEVGP VVSFRLVTDR ETGKPKGYGF CEYKDEETAL SARRNLQSYE
101: INGRQLRVDF AENDKGTDKT RDQGQGGPAL PAATESQKQF GGSVDLNMHQ PVGVNLAISA ASVMAGALGG PQVGTQSTLQ APASDPLTLH LAKMSRSQLS
201: EIISSVKLMA TQNKEQARQL LVSRPQLLKA VFLAQIMLGI VSPQVLQTPN IVQAPNHMSG SSIQDTQLSG QVSTQNLLPP LAQRSQQLSR PTHSQFPIQQ
301: SSKQPFSQIP QLVAQPGPSS MNAQVQGLSE TAPFQRQKQL VPTSISMGYS VQASVPNSAI QPSQVPRPLL TNSVMQQGGH MVSLNYGKRI NEGPHESINR
401: PSKMMRVDER RTASFSDGHA SNSMLPNPVQ VQERAHQTQI SPDVQATLLQ QVMNLTPEQL RLLTPEQQQE VRKLQQALKQ DNMTQHS

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.