Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88655 | Canola | nucleus | 99.52 | 99.62 |
| Bra002677.1-P | Field mustard | nucleus | 71.54 | 63.91 |
| AT5G58040.1 | Thale cress | nucleus | 70.77 | 61.96 |
| PGSC0003DMT400008250 | Potato | nucleus | 4.01 | 35.59 |
| KRH37905 | Soybean | nucleus | 40.31 | 32.02 |
| KRH12930 | Soybean | nucleus | 39.83 | 31.98 |
| VIT_11s0037g00130.t01 | Wine grape | nucleus | 44.51 | 31.61 |
| Solyc07g005320.2.1 | Tomato | nucleus | 38.78 | 29.42 |
| Zm00001d033843_P007 | Maize | nucleus | 34.38 | 28.32 |
| Zm00001d013380_P001 | Maize | nucleus | 34.29 | 28.13 |
| TraesCS4B01G056200.1 | Wheat | nucleus | 30.18 | 27.89 |
| TraesCS4A01G258200.3 | Wheat | nucleus | 34.48 | 27.88 |
| KXG37677 | Sorghum | nucleus | 34.29 | 27.87 |
| TraesCS4D01G056600.1 | Wheat | nucleus | 34.0 | 27.47 |
| HORVU4Hr1G009390.7 | Barley | nucleus | 33.33 | 27.33 |
| GSMUA_Achr7P27630_001 | Banana | nucleus | 34.86 | 27.06 |
| GSMUA_Achr4P14570_001 | Banana | nucleus | 32.19 | 24.05 |
| Bra001208.1-P | Field mustard | nucleus | 11.75 | 9.71 |
Protein Annotations
Description
AT5G58040 (E=1e-164) ATFIP1[V] | ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]); RNA binding / protein binding
Coordinates
chrA03:-:5045709..5050023
Molecular Weight (calculated)
117786.0 Da
IEP (calculated)
6.061
GRAVY (calculated)
-1.359
Length
1047 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEDDEFGDL YSDVLPPFQP PPPPPLRSID LNLRLHEQDA AEPNSPSVAK VPDTTASKPS TTPSHDAIGD DKDMNFDIEE PDADSTPAIP GLATDQGTAQ
0101: VGEGGYRGQG DDWDSDSEDD LQIVLNDNVA DRRARMGDNE DDDEEPLVIV TDADPNQHME EQQLWGEEAV EGESKEGGEA VKGSAAGPTK AGYNSHGYHH
0201: PFHSQFKYIR PGAAPVSGSV ASAAGQVRPP ANLGPMAGRG RGDWRPMGVR NASAAQKGYH QTWGGNTAGR GLDFTLPSHK TIFEFDVDAF EEKPWRYQGV
0301: DITDYFNFGL NEESWKDYCK QLDQHRIETT MKSRIRVYES GRTDQSYDPD LPPELAAATG AQVVPVDSSN LVKLDTAQGD SANIRPPLPP GRPIPVETGS
0401: VERPSSIDTR APRMRDLEAI IEIVCEDSHE DEPSGEKGAE QADSGQTFRS SSPVGDRGTR SSTVDREDVG GEAGKDAEIE EEQKMSSAVP RSAVEKDDGG
0501: ESKTERSSES SKARSGSHRD HQQLKDSAEE EVIQDRNHCT RPASNKKHHV NNAQHQSRKY QDIGKEMERT RAGSKGESGK DFDKRKERDV DGGVWRRKED
0601: DTFSRRGGDE GSRKRDRGDD HVPSRNHVDD GGLRNNYELD YHISKRRKVE EYVRRTRSEK NEISFGQREE SISRLRRERG DRLDYQKRDV QHKIRDDIYD
0701: QASLRHRDDI YMQRDGNERL RERGDLDKLK LTHEDGLSAR GRERQVAARG HRGSEDRSSS RMKDEYKEHL TKDTTRQTKQ TKRKEHPGEE SSSYHRGRED
0801: DIVSNEKKQR LERTSAKTDK VVDSLDGQRL QDRKHKDSRR KIKEQREDTD SSRIKQGEQN GSSQVTGLKR TNEARNYRSE ISQQHNATKR HKEDTSSGDE
0901: LQDSKRGRTK LERWGSHKER DDDITAKGYS STSKIQEKEK GTNGRASEPN LGSIGKNRNV TEEKSGHDLA ETKDGSEKGL GDRHLDMIVK FKKRSERFKL
1001: PMPTEKDNKA GVKKMESEML PSAKIEGPAD SEVKAERPSR KRRWTSS
0101: VGEGGYRGQG DDWDSDSEDD LQIVLNDNVA DRRARMGDNE DDDEEPLVIV TDADPNQHME EQQLWGEEAV EGESKEGGEA VKGSAAGPTK AGYNSHGYHH
0201: PFHSQFKYIR PGAAPVSGSV ASAAGQVRPP ANLGPMAGRG RGDWRPMGVR NASAAQKGYH QTWGGNTAGR GLDFTLPSHK TIFEFDVDAF EEKPWRYQGV
0301: DITDYFNFGL NEESWKDYCK QLDQHRIETT MKSRIRVYES GRTDQSYDPD LPPELAAATG AQVVPVDSSN LVKLDTAQGD SANIRPPLPP GRPIPVETGS
0401: VERPSSIDTR APRMRDLEAI IEIVCEDSHE DEPSGEKGAE QADSGQTFRS SSPVGDRGTR SSTVDREDVG GEAGKDAEIE EEQKMSSAVP RSAVEKDDGG
0501: ESKTERSSES SKARSGSHRD HQQLKDSAEE EVIQDRNHCT RPASNKKHHV NNAQHQSRKY QDIGKEMERT RAGSKGESGK DFDKRKERDV DGGVWRRKED
0601: DTFSRRGGDE GSRKRDRGDD HVPSRNHVDD GGLRNNYELD YHISKRRKVE EYVRRTRSEK NEISFGQREE SISRLRRERG DRLDYQKRDV QHKIRDDIYD
0701: QASLRHRDDI YMQRDGNERL RERGDLDKLK LTHEDGLSAR GRERQVAARG HRGSEDRSSS RMKDEYKEHL TKDTTRQTKQ TKRKEHPGEE SSSYHRGRED
0801: DIVSNEKKQR LERTSAKTDK VVDSLDGQRL QDRKHKDSRR KIKEQREDTD SSRIKQGEQN GSSQVTGLKR TNEARNYRSE ISQQHNATKR HKEDTSSGDE
0901: LQDSKRGRTK LERWGSHKER DDDITAKGYS STSKIQEKEK GTNGRASEPN LGSIGKNRNV TEEKSGHDLA ETKDGSEKGL GDRHLDMIVK FKKRSERFKL
1001: PMPTEKDNKA GVKKMESEML PSAKIEGPAD SEVKAERPSR KRRWTSS
0001: MEEDDEFGDL YSDVLQPFQP PVVLPPPPPL PHRSIDLNLR SQDQDVSEPN SAPISRVSDN DAVKLSTQDA TRQAIVDGGG DDKDMSFDIE EPDADSTPTI
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
Arabidopsis Description
FIPS5FIP1[V]-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KDH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.