Factsheet for Bra011138.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra005907.1-P
Bra006786.1-P
Bra009219.1-P
Bra009662.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	Bra005907.1-P	AT5G06710.1	21798944
AT4G29820.1	Bra009219.1-P	AT5G06710.1	21798944
AT4G29820.1	Bra002677.1-P	AT5G58040.1	16282318
AT4G29820.1	Bra006786.1-P	AT5G58040.1	16282318
AT4G29820.1	Bra002677.1-P	AT5G58040.1	18479511
AT4G29820.1	Bra006786.1-P	AT5G58040.1	18479511
AT4G29820.1	Bra009662.1-P	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43528	Canola	cytosol	92.24	93.09
AT4G29820.1	Thale cress	cytosol	80.82	79.73
CDX68589	Canola	plastid	97.72	75.35
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	15.07	67.35
PGSC0003DMT400046377	Potato	cytosol	55.25	59.9
KRH37445	Soybean	nucleus	60.27	58.67
Solyc07g041000.2.1	Tomato	cytosol	53.42	57.92
GSMUA_Achr3P26260_001	Banana	cytosol	56.62	57.67
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	54.79	56.6
TraesCS7D01G325500.1	Wheat	cytosol	54.34	56.13
Zm00001d050266_P001	Maize	cytosol	56.16	54.91
Bra019155.1-P	Field mustard	cytosol	47.95	52.5
Bra013899.1-P	Field mustard	cytosol	47.95	52.5
Os08t0398800-02	Rice	cytosol	52.51	50.88
OQU80396	Sorghum	cytosol	55.25	50.84
TraesCS7B01G229300.1	Wheat	cytosol	54.79	48.98
HORVU7Hr1G078670.4	Barley	plastid	52.97	44.96
VIT_11s0016g01760.t01	Wine grape	plastid	59.36	44.67
KRH12461	Soybean	plastid	54.79	40.54
Bra010457.1-P	Field mustard	cytosol	47.95	26.72

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EnsemblPlantsGene:Bra011138	EnsemblPlants:Bra011138.1	EnsemblPlants:Bra011138.1-P	InterPro:Cleav_polyA_spec_factor_su5
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849
GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
UniProt:M4D3T4	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1
SUPFAM:SSF55811	UniParc:UPI000254715C	:	:	:	:

Description

AT4G29820 (E=1e-108) CFIM-25, ATCFIM-25 | CFIM-25

Coordinates

chrA01:+:3715701..3716895

Molecular Weight (calculated)

25051.7 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.182

Length

219 amino acids

Sequence
(BLAST)

001: MGEEAPILDI ESSEENATRR NEDSMVDLYP LSSYYFGSRD AVRVKDEMIA DRVVRLKSDY AAHGLRTCVE AVLLVELFKH PHVLLLQYRN SIFKLPGGRL
101: RPGESDVDGL KRKLASKLSV NENVLLPGLE VGECIGKWWR PNFETLMYPF LPPNVKHPKE CLKLFLGRLA LHQQFVVPKN FKLLAVPLCQ LHENEKTYGP
201: IISQIPKLLS KFSFNMMEI

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.