Factsheet for Os08t0398800-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0507700-01
Os03t0156600-01
Os04t0244800-01
Os09t0447000-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	Os09t0447000-00	AT5G06710.1	21798944
AT4G29820.1	Os01t0507700-01	AT5G66110.1	21798944
AT4G29820.1	Os03t0156600-01	AT5G66110.1	21798944
AT4G29820.1	Os04t0244800-01	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	70.35	75.0
TraesCS7D01G325500.1	Wheat	cytosol	69.47	74.06
Zm00001d050266_P001	Maize	cytosol	71.68	72.32
OQU80396	Sorghum	cytosol	71.68	68.07
TraesCS7B01G229300.1	Wheat	cytosol	69.03	63.67
HORVU7Hr1G078670.4	Barley	plastid	69.91	61.24
GSMUA_Achr3P26260_001	Banana	cytosol	57.52	60.47
CDY43528	Canola	cytosol	51.33	53.46
Bra011138.1-P	Field mustard	cytosol	50.88	52.51
AT4G29820.1	Thale cress	cytosol	51.33	52.25
PGSC0003DMT400046377	Potato	cytosol	46.46	51.98
Solyc07g041000.2.1	Tomato	cytosol	45.58	50.99
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	11.95	49.09
KRH37445	Soybean	nucleus	45.58	45.78
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	8.85	40.82
CDX88086	Canola	cytosol, mitochondrion, peroxisome	8.85	40.82
CDX68589	Canola	plastid	50.88	40.49
VIT_11s0016g01760.t01	Wine grape	plastid	51.33	39.86
CDX85073	Canola	cytosol, extracellular, nucleus	34.96	37.09
KRH12461	Soybean	plastid	45.13	34.46

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EntrezGene:4345502	EMBL:AK061260	EMBL:AK099189	ProteinID:BAC99373.1
ProteinID:BAC99435.1	ProteinID:BAF23661.1	ProteinID:BAT05327.1	InterPro:Cleav_polyA_spec_factor_su5	ProteinID:EAZ42646.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006259	GO:GO:0006298
GO:GO:0006378	GO:GO:0006810	GO:GO:0006812	GO:GO:0006813	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015299	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0030983	GO:GO:0055085	GO:GO:1902600	InterPro:NUDIX_hydrolase-like_dom_sf	EnsemblPlantsGene:Os08g0398800	EnsemblPlants:Os08t0398800-02
PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	UniProt:Q6ZIV4	SUPFAM:SSF55811
UniParc:UPI00001D8CC4	RefSeq:XP_015649946.1	SEG:seg	:	:	:

Description

Cleavage and polyadenylation specificity factor, 25 kDa subunit domain containing protein. (Os08t0398800-02)

Coordinates

chr8:-:19031551..19033254

Molecular Weight (calculated)

24586.7 Da

IEP (calculated)

6.790

GRAVY (calculated)

0.009

Length

226 amino acids

Sequence
(BLAST)

001: MGLEIMTDEA AAAPSPAAAA ARVEIYPLCR YYFGARDVAA GGAGAGLETA ADRALRLKAN FAAHGLRTSV HGVLLVELFD HPHVLLLQVR NSSFLLPGGR
101: LRPGEQDVQG LKRKLSTKLS VAGHQDDEDG DGDDEWQIGE CIGMWWRSEF DAAPFPYLLP NARAPKECIK LFLIKLPVSR QFVVPRNMKL LAVPLSQIHD
201: NAQVYGSIIA GIPNLLSKFS MNIISD

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.