CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, nucleus

Predictor Summary:

plastid 1
extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, nucleus, plastid
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70076
CDX78884
CDX81016
CDX88005
CDX88655
CDX98948
CDY07874
CDY11833
CDY43886
CDY55775
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	CDX70076	AT5G06710.1	21798944
AT4G29820.1	CDX78884	AT5G06710.1	21798944
AT4G29820.1	CDX81016	AT5G06710.1	21798944
AT4G29820.1	CDX98948	AT5G06710.1	21798944
AT4G29820.1	CDY55775	AT5G06710.1	21798944
AT4G29820.1	CDX88655	AT5G58040.1	16282318
AT4G29820.1	CDY11833	AT5G58040.1	16282318
AT4G29820.1	CDY43886	AT5G58040.1	16282318
AT4G29820.1	CDY70580	AT5G58040.1	16282318
AT4G29820.1	CDX88655	AT5G58040.1	18479511
AT4G29820.1	CDY11833	AT5G58040.1	18479511
AT4G29820.1	CDY43886	AT5G58040.1	18479511
AT4G29820.1	CDY70580	AT5G58040.1	18479511
AT4G29820.1	CDX88005	AT5G66110.1	21798944
AT4G29820.1	CDY07874	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88086	Canola	cytosol, mitochondrion, peroxisome	15.02	65.31
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	15.49	60.0
CDY43528	Canola	cytosol	54.93	53.92
AT4G29820.1	Thale cress	cytosol	53.99	51.8
PGSC0003DMT400046377	Potato	cytosol	40.85	43.07
Solyc07g041000.2.1	Tomato	cytosol	39.91	42.08
CDX68589	Canola	plastid	54.93	41.2
KRH37445	Soybean	nucleus	43.19	40.89
GSMUA_Achr3P26260_001	Banana	cytosol	38.5	38.14
TraesCS7D01G325500.1	Wheat	cytosol	36.62	36.79
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	36.15	36.32
CDX89414	Canola	cytosol	33.8	36.0
CDY52363	Canola	cytosol	33.8	36.0
CDY54086	Canola	cytosol	33.8	36.0
CDY50198	Canola	cytosol	33.33	35.5
Zm00001d050266_P001	Maize	cytosol	37.09	35.27
CDX92717	Canola	cytosol	32.86	35.0
Os08t0398800-02	Rice	cytosol	37.09	34.96
OQU80396	Sorghum	cytosol	37.09	33.19
VIT_11s0016g01760.t01	Wine grape	plastid	43.19	31.62
TraesCS7B01G229300.1	Wheat	cytosol	36.15	31.43
CDX94441	Canola	cytosol	33.33	30.08
KRH12461	Soybean	plastid	41.31	29.73
HORVU7Hr1G078670.4	Barley	plastid	35.68	29.46

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	GO:A0A078DCR3	EnsemblPlants:CDX85073	ProteinID:CDX85073	ProteinID:CDX85073.1
InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00142539001	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PANTHER:PTHR13047	PANTHER:PTHR13047:SF1
SUPFAM:SSF55811	UniParc:UPI0004EF0670	:	:	:	:

Description

BnaC07g08330D

Coordinates

chrLK031840:-:156816..160076

Molecular Weight (calculated)

24040.8 Da

IEP (calculated)

9.754

GRAVY (calculated)

0.127

Length

213 amino acids

Sequence
(BLAST)

001: MNLTDFSMGF GSVFSLVSDR LVLVELFKHP HVLLLQYRNS IFKLPGGRLR PGESDIEGLK RKLASKLSVN ENVLVSGLEV GECIGMWLRP NFETLMYPFL
101: PPNVKHPKTI VGLSVPREYI PFQEVGQFFH SQCMQSMLPT IPGNPRCSPI LSSLSRSAAV GCLSSIFFFS VQECLKLFLG RLALHQQFFV PKNFKLLAVP
201: LSQIHENEKV KKY

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.