Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019155.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX92717 | Canola | cytosol | 99.5 | 99.5 |
| CDY52363 | Canola | cytosol | 97.0 | 97.0 |
| CDY54086 | Canola | cytosol | 97.0 | 97.0 |
| AT4G25550.1 | Thale cress | cytosol | 96.5 | 96.5 |
| CDX89414 | Canola | cytosol | 96.5 | 96.5 |
| PGSC0003DMT400084196 | Potato | peroxisome | 31.0 | 92.54 |
| KRH35335 | Soybean | cytosol | 32.5 | 89.04 |
| KRG91493 | Soybean | endoplasmic reticulum, nucleus | 88.5 | 88.5 |
| PGSC0003DMT400037077 | Potato | cytosol | 27.0 | 87.1 |
| Solyc03g025880.2.1 | Tomato | nucleus | 86.5 | 86.5 |
| Solyc01g009630.2.1 | Tomato | nucleus | 85.5 | 85.5 |
| VIT_16s0050g00030.t01 | Wine grape | cytosol, plastid | 84.5 | 84.5 |
| Solyc01g009620.2.1 | Tomato | nucleus | 84.5 | 84.5 |
| HORVU2Hr1G124110.1 | Barley | cytosol | 85.5 | 84.24 |
| TraesCS2D01G592500.2 | Wheat | cytosol | 85.5 | 84.24 |
| TraesCS2B01G608100.1 | Wheat | cytosol | 85.5 | 84.24 |
| TraesCS2A01G580600.1 | Wheat | nucleus | 85.5 | 84.24 |
| TraesCS1B01G366600.1 | Wheat | cytosol | 85.5 | 84.24 |
| PGSC0003DMT400037076 | Potato | cytosol, plastid | 48.0 | 84.21 |
| TraesCS1D01G355400.1 | Wheat | cytosol | 85.0 | 83.74 |
| TraesCS1A01G355100.1 | Wheat | cytosol | 85.0 | 83.74 |
| CDX94441 | Canola | cytosol | 95.5 | 80.93 |
| HORVU1Hr1G081030.2 | Barley | cytosol | 41.5 | 78.3 |
| GSMUA_AchrUn_... | Banana | plastid | 24.5 | 55.06 |
| CDX88086 | Canola | cytosol, mitochondrion, peroxisome | 12.5 | 51.02 |
| HORVU0Hr1G001450.1 | Barley | plastid | 46.0 | 50.83 |
| CDY43528 | Canola | cytosol | 53.0 | 48.85 |
| CDX88087 | Canola | cytosol, extracellular, mitochondrion, plastid | 12.5 | 45.45 |
| CDX68589 | Canola | plastid | 53.0 | 37.32 |
| CDX85073 | Canola | cytosol, extracellular, nucleus | 35.5 | 33.33 |
Protein Annotations
| MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | GO:A0A078IMD3 | UniProt:A0A078IMD3 | EnsemblPlants:CDY50198 | ProteinID:CDY50198 |
| ProteinID:CDY50198.1 | InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00096131001 | InterPro:NUDIX_hydrolase-like_dom_sf | PFAM:PF13869 | PIRSF:PIRSF017888 |
| PANTHER:PTHR13047 | SUPFAM:SSF55811 | UniParc:UPI0002541144 | : | : | : |
Description
BnaA03g47500DBnaA03g47500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMD3]
Coordinates
chrLK032888:-:77959..80241
Molecular Weight (calculated)
22845.0 Da
IEP (calculated)
9.630
GRAVY (calculated)
-0.327
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKVN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGESEVEG LKRKLTSKLG
101: GNSAGIVPDW KVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAGIVPDW KVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.