Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G608100.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS2A01G580600.1 | Wheat | nucleus | 100.0 | 100.0 |
| HORVU2Hr1G124110.1 | Barley | cytosol | 99.51 | 99.51 |
| TraesCS1D01G355400.1 | Wheat | cytosol | 96.55 | 96.55 |
| GSMUA_Achr2P03900_001 | Banana | cytosol | 91.63 | 93.0 |
| PGSC0003DMT400084196 | Potato | peroxisome | 30.54 | 92.54 |
| GSMUA_Achr1P17490_001 | Banana | unclear | 91.13 | 92.5 |
| KRH35335 | Soybean | cytosol | 32.51 | 90.41 |
| GSMUA_Achr9P20560_001 | Banana | cytosol | 78.82 | 90.4 |
| Solyc03g025880.2.1 | Tomato | nucleus | 87.68 | 89.0 |
| PGSC0003DMT400037077 | Potato | cytosol | 27.09 | 88.71 |
| PGSC0003DMT400037076 | Potato | cytosol, plastid | 49.26 | 87.72 |
| VIT_16s0050g00030.t01 | Wine grape | cytosol, plastid | 86.21 | 87.5 |
| KRG91493 | Soybean | endoplasmic reticulum, nucleus | 85.71 | 87.0 |
| CDX92717 | Canola | cytosol | 84.73 | 86.0 |
| CDY54086 | Canola | cytosol | 84.24 | 85.5 |
| CDY52363 | Canola | cytosol | 84.24 | 85.5 |
| CDY50198 | Canola | cytosol | 84.24 | 85.5 |
| Bra019155.1-P | Field mustard | cytosol | 84.24 | 85.5 |
| AT4G25550.1 | Thale cress | cytosol | 83.74 | 85.0 |
| Solyc01g009620.2.1 | Tomato | nucleus | 83.74 | 85.0 |
| Solyc01g009630.2.1 | Tomato | nucleus | 83.74 | 85.0 |
| CDX89414 | Canola | cytosol | 83.25 | 84.5 |
| Bra013899.1-P | Field mustard | cytosol | 83.25 | 84.5 |
| VIT_15s0046g03350.t01 | Wine grape | cytosol | 88.18 | 76.17 |
| CDX94441 | Canola | cytosol | 82.76 | 71.19 |
| TraesCS7D01G325500.1 | Wheat | cytosol | 46.31 | 44.34 |
| Bra010457.1-P | Field mustard | cytosol | 83.25 | 43.0 |
Protein Annotations
| MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:NUDIX_hydrolase-like_dom_sf | PFAM:PF13869 | PIRSF:PIRSF017888 |
| PANTHER:PTHR13047 | SUPFAM:SSF55811 | EnsemblPlantsGene:TraesCS2D01G592500 | EnsemblPlants:TraesCS2D01G592500.2 | : | : |
Description
No Description!
Coordinates
chr2D:-:647511803..647515435
Molecular Weight (calculated)
23200.4 Da
IEP (calculated)
9.541
GRAVY (calculated)
-0.233
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGASTSSVV NVYPLANYTF GTKEPKMEKD TSVADRLARM KVNYMKEGMR TSVEAILLVQ EHNHPHILLL QIGNTFCKLP GGRLKPGENE IEGLKRKLCS
101: KLAVNSPSFP PNWQVGECVA VWWRPNFETV MYPYCPPHIT KPKECKKLFI VHLTEREYFA VPRNLKLLAV PLFELYDNVQ RYGPVISTIP QQLSRFQFNM
201: VSS
101: KLAVNSPSFP PNWQVGECVA VWWRPNFETV MYPYCPPHIT KPKECKKLFI VHLTEREYFA VPRNLKLLAV PLFELYDNVQ RYGPVISTIP QQLSRFQFNM
201: VSS
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.