Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52363 | Canola | cytosol | 97.5 | 97.5 |
| CDY54086 | Canola | cytosol | 97.5 | 97.5 |
| CDX92717 | Canola | cytosol | 97.0 | 97.0 |
| Bra019155.1-P | Field mustard | cytosol | 96.5 | 96.5 |
| CDY50198 | Canola | cytosol | 96.5 | 96.5 |
| Bra013899.1-P | Field mustard | cytosol | 96.0 | 96.0 |
| CDX89414 | Canola | cytosol | 96.0 | 96.0 |
| PGSC0003DMT400084196 | Potato | peroxisome | 30.5 | 91.04 |
| KRH35335 | Soybean | cytosol | 32.5 | 89.04 |
| KRG91493 | Soybean | endoplasmic reticulum, nucleus | 89.0 | 89.0 |
| PGSC0003DMT400037077 | Potato | cytosol | 27.0 | 87.1 |
| Solyc03g025880.2.1 | Tomato | nucleus | 85.0 | 85.0 |
| Solyc01g009630.2.1 | Tomato | nucleus | 85.0 | 85.0 |
| VIT_16s0050g00030.t01 | Wine grape | cytosol, plastid | 84.0 | 84.0 |
| Solyc01g009620.2.1 | Tomato | nucleus | 84.0 | 84.0 |
| HORVU2Hr1G124110.1 | Barley | cytosol | 85.0 | 83.74 |
| TraesCS2A01G580600.1 | Wheat | nucleus | 85.0 | 83.74 |
| TraesCS2B01G608100.1 | Wheat | cytosol | 85.0 | 83.74 |
| TraesCS2D01G592500.2 | Wheat | cytosol | 85.0 | 83.74 |
| TraesCS1B01G366600.1 | Wheat | cytosol | 84.0 | 82.76 |
| TraesCS1A01G355100.1 | Wheat | cytosol | 83.5 | 82.27 |
| TraesCS1D01G355400.1 | Wheat | cytosol | 83.5 | 82.27 |
| PGSC0003DMT400037076 | Potato | cytosol, plastid | 46.5 | 81.58 |
| CDX94441 | Canola | cytosol | 95.0 | 80.51 |
| HORVU1Hr1G081030.2 | Barley | cytosol | 41.5 | 78.3 |
| GSMUA_AchrUn_... | Banana | plastid | 24.0 | 53.93 |
| HORVU0Hr1G001450.1 | Barley | plastid | 44.5 | 49.17 |
| Bra010457.1-P | Field mustard | cytosol | 96.5 | 49.11 |
| AT4G29820.1 | Thale cress | cytosol | 52.5 | 47.3 |
Protein Annotations
| MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | EntrezGene:828660 | UniProt:A0A178V0E0 | ProteinID:AEE85076.1 | EMBL:AK118070 |
| EMBL:AK220576 | EMBL:AK228476 | ArrayExpress:AT4G25550 | EnsemblPlantsGene:AT4G25550 | RefSeq:AT4G25550 | TAIR:AT4G25550 |
| RefSeq:AT4G25550-TAIR-G | EnsemblPlants:AT4G25550.1 | TAIR:AT4G25550.1 | Unigene:At.44085 | EMBL:BT005519 | ProteinID:CAA18171.1 |
| ProteinID:CAB81365.1 | InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046872 | RefSeq:NP_194285.2 |
| InterPro:NUDIX_hydrolase-like_dom_sf | ProteinID:OAO99213.1 | PFAM:PF13869 | PIRSF:PIRSF017888 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR13047 | UniProt:Q8GXS3 |
| SUPFAM:SSF55811 | UniParc:UPI000000C68E | : | : | : | : |
Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
Coordinates
chr4:+:13048367..13051273
Molecular Weight (calculated)
22830.9 Da
IEP (calculated)
9.484
GRAVY (calculated)
-0.327
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.