Factsheet for HORVU1Hr1G081030.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G009390.7
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT4G25550.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35335	Soybean	cytosol	61.32	89.04
PGSC0003DMT400037077	Potato	cytosol	51.89	88.71
TraesCS1B01G366600.1	Wheat	cytosol	86.79	45.32
TraesCS1D01G355400.1	Wheat	cytosol	85.85	44.83
TraesCS1A01G355100.1	Wheat	cytosol	85.85	44.83
HORVU2Hr1G124110.1	Barley	cytosol	85.85	44.83
GSMUA_Achr1P17490_001	Banana	unclear	82.08	43.5
GSMUA_Achr2P03900_001	Banana	cytosol	81.13	43.0
AT4G25550.1	Thale cress	cytosol	78.3	41.5
Bra019155.1-P	Field mustard	cytosol	78.3	41.5
CDX92717	Canola	cytosol	78.3	41.5
CDY50198	Canola	cytosol	78.3	41.5
CDY52363	Canola	cytosol	78.3	41.5
CDY54086	Canola	cytosol	78.3	41.5
Solyc03g025880.2.1	Tomato	nucleus	78.3	41.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	77.36	41.0
CDX89414	Canola	cytosol	77.36	41.0
Bra013899.1-P	Field mustard	cytosol	77.36	41.0
KRG91493	Soybean	endoplasmic reticulum, nucleus	76.42	40.5
Solyc01g009620.2.1	Tomato	nucleus	74.53	39.5
Solyc01g009630.2.1	Tomato	nucleus	74.53	39.5
VIT_15s0046g03350.t01	Wine grape	cytosol	78.3	35.32
GSMUA_Achr9P20560_001	Banana	cytosol	58.49	35.03
CDX94441	Canola	cytosol	77.36	34.75
Bra010457.1-P	Field mustard	cytosol	76.42	20.61
HORVU7Hr1G078670.4	Barley	plastid	48.11	19.77
PGSC0003DMT400084196	Potato	peroxisome	2.83	4.48
PGSC0003DMT400037076	Potato	cytosol, plastid	3.77	3.51
HORVU0Hr1G001450.1	Barley	plastid	4.72	2.76

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	UniProt:A0A287GGQ7	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:HORVU1Hr1G081030	EnsemblPlants:HORVU1Hr1G081030.2	PFAM:PF13869	PANTHER:PTHR13047
UniParc:UPI000B469FCA	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:526845315..526847800

Molecular Weight (calculated)

12384.1 Da

IEP (calculated)

8.631

GRAVY (calculated)

-0.092

Length

106 amino acids

Sequence
(BLAST)

001: VQQCSNFQVG VSVFRPAVGE CVAEWWRPNF ETVMYPYCPP HISKPKECKK LFIVHLTERE YFAVPRNLKL LAVPLFELYD NVQRYGPVIS TIPQQLSRFQ
101: FNMVSS

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.