Factsheet for HORVU7Hr1G078670.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G011060.1
HORVU3Hr1G049780.1
HORVU4Hr1G009390.7
HORVU5Hr1G067010.2
HORVU5Hr1G069380.2
HORVU6Hr1G009000.1
HORVU7Hr1G090970.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29820.1	HORVU5Hr1G067010.2	AT5G06710.1	21798944
AT4G29820.1	HORVU4Hr1G009390.7	AT5G58040.1	16282318
AT4G29820.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511
AT4G29820.1	HORVU2Hr1G011060.1	AT5G66110.1	21798944
AT4G29820.1	HORVU3Hr1G049780.1	AT5G66110.1	21798944
AT4G29820.1	HORVU5Hr1G069380.2	AT5G66110.1	21798944
AT4G29820.1	HORVU6Hr1G009000.1	AT5G66110.1	21798944
AT4G29820.1	HORVU7Hr1G090970.1	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G325500.1	Wheat	cytosol	72.09	87.74
TraesCS7A01G328600.1	Wheat	cytosol, nucleus, peroxisome	69.77	84.91
TraesCS7B01G229300.1	Wheat	cytosol	71.32	75.1
Os08t0398800-02	Rice	cytosol	61.24	69.91
Zm00001d050266_P001	Maize	cytosol	57.36	66.07
OQU80396	Sorghum	cytosol	60.08	65.13
GSMUA_Achr3P26260_001	Banana	cytosol	50.39	60.47
AT4G29820.1	Thale cress	cytosol	46.51	54.05
Bra011138.1-P	Field mustard	cytosol	44.96	52.97
CDY43528	Canola	cytosol	44.19	52.53
PGSC0003DMT400046377	Potato	cytosol	40.31	51.49
Solyc07g041000.2.1	Tomato	cytosol	39.15	50.0
HORVU1Hr1G081030.2	Barley	cytosol	19.77	48.11
HORVU2Hr1G124110.1	Barley	cytosol	36.82	46.8
KRH37445	Soybean	nucleus	39.92	45.78
CDX88087	Canola	cytosol, extracellular, mitochondrion, plastid	9.3	43.64
CDX68589	Canola	plastid	45.35	41.2
VIT_11s0016g01760.t01	Wine grape	plastid	44.57	39.52
CDX88086	Canola	cytosol, mitochondrion, peroxisome	7.36	38.78
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	7.36	38.78
CDX85073	Canola	cytosol, extracellular, nucleus	29.46	35.68
KRH12461	Soybean	plastid	39.15	34.12
HORVU0Hr1G001450.1	Barley	plastid	22.87	32.6

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	UniProt:A0A287X0G1	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:HORVU7Hr1G078670	EnsemblPlants:HORVU7Hr1G078670.4	PFAM:PF13869	PIRSF:PIRSF017888
PANTHER:PTHR13047	PANTHER:PTHR13047:SF1	UniParc:UPI000B476760	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:462392971..462394627

Molecular Weight (calculated)

28662.6 Da

IEP (calculated)

9.935

GRAVY (calculated)

-0.331

Length

258 amino acids

Sequence
(BLAST)

001: SRSPRHVPES RPCSTSPRAP SFSPTTDQKR APNPTAPACI GERVDMGLEM APVATESSPE QQPEVAIYPL CRYYFGAKDA RPCAGETAAD RALRLKANFA
101: ARGLRTCVHG VLLVELSGHP HVLLLQVRNS SFLLPGGRLR PAEQDLQGLK RKLSSKLAAE DRNGDHHWQI GECIGMWWRS EFDARPFPYP PPNTRVSKEC
201: VKLFLVRLPM ARQFVVPRNL KLLAVPLSQI HDNAQVYGPI ISAIPNLLSK FSFNVVRD

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.