Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G005790.3 | |
| HORVU2Hr1G077940.1 | |
| HORVU6Hr1G050140.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38580.1 | HORVU0Hr1G005790.3 | AT4G27780.1 | 18823312 |
| AT5G66110.1 | HORVU2Hr1G077940.1 | AT1G54060.1 | 21798944 |
| AT5G66110.1 | HORVU6Hr1G050140.1 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G242000.1 | Wheat | cytosol | 96.71 | 96.71 |
| TraesCS5D01G250700.1 | Wheat | cytosol | 95.39 | 95.39 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 94.74 | 94.74 |
| HORVU3Hr1G049780.1 | Barley | cytosol | 76.97 | 77.48 |
| EES14354 | Sorghum | cytosol | 73.68 | 74.17 |
| Zm00001d052760_P001 | Maize | cytosol | 72.37 | 72.85 |
| Zm00001d034978_P001 | Maize | cytosol | 71.71 | 72.19 |
| Os01t0507700-01 | Rice | plasma membrane | 68.42 | 68.87 |
| KRH60697 | Soybean | cytosol | 53.95 | 53.25 |
| Bra009662.1-P | Field mustard | cytosol | 42.11 | 52.89 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 42.11 | 52.89 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 28.95 | 51.16 |
| CDY07874 | Canola | cytosol | 48.68 | 51.03 |
| CDX88005 | Canola | cytosol | 48.68 | 51.03 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 51.97 | 50.97 |
| PGSC0003DMT400009390 | Potato | cytosol | 53.29 | 50.94 |
| Solyc02g083550.1.1 | Tomato | cytosol | 51.97 | 49.69 |
| CDX90282 | Canola | cytosol | 50.0 | 49.67 |
| CDY12089 | Canola | cytosol | 50.0 | 49.67 |
| PGSC0003DMT400015784 | Potato | cytosol | 50.0 | 49.67 |
| Bra010738.1-P | Field mustard | cytosol | 50.0 | 49.67 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 51.97 | 49.38 |
| KRH29001 | Soybean | cytosol | 50.66 | 49.36 |
| Solyc01g111600.2.1 | Tomato | nucleus | 49.34 | 49.02 |
| AT4G38580.1 | Thale cress | cytosol | 49.34 | 49.02 |
| AT5G66110.1 | Thale cress | cytosol | 47.37 | 48.98 |
| Bra033570.1-P | Field mustard | cytosol | 48.68 | 48.37 |
| CDY65011 | Canola | cytosol | 48.68 | 48.37 |
| HORVU5Hr1G057730.1 | Barley | cytosol | 50.0 | 47.2 |
| CDX72748 | Canola | cytosol | 47.37 | 47.06 |
| Bra011581.1-P | Field mustard | cytosol | 45.39 | 45.1 |
| CDX69108 | Canola | cytosol | 45.39 | 45.1 |
| CDY52653 | Canola | cytosol | 45.39 | 45.1 |
| AT4G35060.1 | Thale cress | cytosol | 44.74 | 44.44 |
| HORVU7Hr1G090970.1 | Barley | mitochondrion | 45.39 | 43.4 |
| CDX76309 | Canola | cytosol | 43.42 | 42.86 |
| Bra034669.1-P | Field mustard | cytosol | 43.42 | 42.86 |
| CDY17504 | Canola | cytosol | 42.76 | 42.21 |
| HORVU4Hr1G017070.3 | Barley | cytosol | 44.74 | 40.0 |
| KRH28829 | Soybean | cytosol | 28.95 | 36.36 |
| HORVU6Hr1G009000.1 | Barley | cytosol, plastid, vacuole | 51.97 | 35.11 |
| HORVU7Hr1G080490.1 | Barley | cytosol | 30.26 | 26.59 |
| HORVU3Hr1G072940.2 | Barley | cytosol | 26.97 | 26.11 |
| HORVU6Hr1G066220.1 | Barley | cytosol | 28.95 | 23.78 |
| HORVU2Hr1G011060.1 | Barley | nucleus, plastid | 20.39 | 20.0 |
| HORVU4Hr1G085090.2 | Barley | plastid | 36.84 | 19.58 |
Protein Annotations
| EMBL:AK360049 | EnsemblPlants:HORVU5Hr1G069380.2 | EnsemblPlantsGene:HORVU5Hr1G069380 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 | PFAM:PF00403 | PFscan:PS50846 | SUPFAM:SSF55008 |
| UniParc:UPI0002005A38 | UniProt:F2D837 | MapMan:35.1 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D837]
Coordinates
chrchr5H:+:522162138..522165143
Molecular Weight (calculated)
17012.9 Da
IEP (calculated)
10.458
GRAVY (calculated)
-0.341
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALDHLSRL CNLTHTREAI RIKKRRPLTT VNIKVKLDCD GCERRVRNAV KSIRGVTTVV VNRKINKVTV TGYVEPRKVL ARVKRTGKTT ADMWPYVPYS
101: VATYPYVGGS YDKKAPAGLV RNVPQAMADP AAPEVKYMNM FNDEDVNACT VM
101: VATYPYVGGS YDKKAPAGLV RNVPQAMADP AAPEVKYMNM FNDEDVNACT VM
001: MGALNYLSEY FSNHFYVSIR KRKKRKVMQT VNIKVKIDCD GCERKIKNAV SSIKGAKSVE VNRKMHKVTV SGYVDPKKVL KTVQSTGKKK AELWPYVPYT
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM
Arabidopsis Description
HIPP22HIPP22 [Source:UniProtKB/TrEMBL;Acc:A0A178WF89]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.