Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14354 | Sorghum | cytosol | 92.72 | 92.72 |
| Zm00001d052760_P001 | Maize | cytosol | 92.05 | 92.05 |
| Os01t0507700-01 | Rice | plasma membrane | 84.77 | 84.77 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 84.77 | 84.77 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 84.77 | 84.77 |
| HORVU3Hr1G049780.1 | Barley | cytosol | 83.44 | 83.44 |
| TraesCS2D01G285700.1 | Wheat | cytosol | 80.13 | 80.13 |
| TraesCS2B01G304100.1 | Wheat | cytosol | 80.13 | 80.13 |
| TraesCS2A01G287200.1 | Wheat | cytosol | 80.13 | 80.13 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 75.5 | 75.0 |
| TraesCS5D01G250700.1 | Wheat | cytosol | 74.83 | 74.34 |
| TraesCS5B01G242000.1 | Wheat | cytosol | 73.51 | 73.03 |
| HORVU5Hr1G069380.2 | Barley | cytosol | 72.19 | 71.71 |
| TraesCS3B01G238100.1 | Wheat | cytosol | 40.4 | 61.0 |
| Bra009662.1-P | Field mustard | cytosol | 47.68 | 59.5 |
| CDX88005 | Canola | cytosol | 53.64 | 55.86 |
| CDY07874 | Canola | cytosol | 53.64 | 55.86 |
| AT5G66110.1 | Thale cress | cytosol | 54.3 | 55.78 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 43.05 | 53.72 |
| Zm00001d004138_P001 | Maize | cytosol | 54.97 | 53.55 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 54.3 | 52.9 |
| Solyc01g111600.2.1 | Tomato | nucleus | 52.98 | 52.29 |
| PGSC0003DMT400015784 | Potato | cytosol | 52.98 | 52.29 |
| Solyc02g083550.1.1 | Tomato | cytosol | 54.3 | 51.57 |
| PGSC0003DMT400009390 | Potato | cytosol | 54.3 | 51.57 |
| Bra010738.1-P | Field mustard | cytosol | 51.66 | 50.98 |
| CDX90282 | Canola | cytosol | 51.66 | 50.98 |
| CDY12089 | Canola | cytosol | 51.66 | 50.98 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 53.64 | 50.62 |
| Bra033570.1-P | Field mustard | cytosol | 50.99 | 50.33 |
| AT4G38580.1 | Thale cress | cytosol | 50.99 | 50.33 |
| CDY65011 | Canola | cytosol | 50.99 | 50.33 |
| KRH60697 | Soybean | cytosol | 50.99 | 50.0 |
| KRH29001 | Soybean | cytosol | 50.99 | 49.36 |
| CDX72748 | Canola | cytosol | 49.67 | 49.02 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 27.81 | 48.84 |
| Zm00001d020257_P001 | Maize | cytosol | 50.33 | 46.91 |
| Zm00001d005656_P001 | Maize | mitochondrion | 49.01 | 45.96 |
| CDY52653 | Canola | cytosol | 45.03 | 44.44 |
| Bra011581.1-P | Field mustard | cytosol | 45.03 | 44.44 |
| CDX76309 | Canola | cytosol | 45.03 | 44.16 |
| Bra034669.1-P | Field mustard | cytosol | 45.03 | 44.16 |
| AT4G35060.1 | Thale cress | cytosol | 44.37 | 43.79 |
| CDX69108 | Canola | cytosol | 44.37 | 43.79 |
| Zm00001d032291_P001 | Maize | cytosol | 41.72 | 43.75 |
| CDY17504 | Canola | cytosol | 44.37 | 43.51 |
| Zm00001d027720_P001 | Maize | cytosol | 43.71 | 42.31 |
| KRH28829 | Soybean | cytosol | 33.11 | 41.32 |
| Zm00001d018075_P001 | Maize | mitochondrion | 39.07 | 31.89 |
| Zm00001d027405_P001 | Maize | plastid | 37.09 | 28.87 |
| Zm00001d051472_P001 | Maize | mitochondrion | 28.48 | 28.67 |
| Zm00001d043403_P001 | Maize | cytosol | 27.81 | 27.1 |
| Zm00001d046169_P001 | Maize | cytosol | 27.81 | 23.2 |
Protein Annotations
| EntrezGene:100281644 | Gene3D:3.30.70.100 | MapMan:35.1 | ProteinID:AQK78028.1 | UniProt:B6SXF1 | EMBL:EU957416 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 |
| InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 |
| PANTHER:PTHR22814:SF176 | SUPFAM:SSF55008 | UniParc:UPI000182C55E | EnsemblPlantsGene:Zm00001d034978 | EnsemblPlants:Zm00001d034978_P001 | EnsemblPlants:Zm00001d034978_T001 |
| SEG:seg | : | : | : | : | : |
Description
Farnesylated protein 2
Coordinates
chr6:-:669527..670473
Molecular Weight (calculated)
16675.4 Da
IEP (calculated)
9.728
GRAVY (calculated)
-0.323
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILDHMSHV CSITETKEAL KLRKKRPLQT VNIKVKMDCE GCERRVKSAV KSMRGVTSVT VNAKQSKCTV TGYVEPAKVL ERVKATGKNA EMWPYVPYTL
101: TTYPYVGGAY DKKAPAGFVR SAPQAMADPS APEVKYMSMF SDENVNACTI M
101: TTYPYVGGAY DKKAPAGFVR SAPQAMADPS APEVKYMSMF SDENVNACTI M
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.