Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010753_P001 | Maize | nucleus | 45.93 | 92.99 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 37.95 | 62.69 |
| KXG30464 | Sorghum | nucleus, plastid | 36.3 | 57.11 |
| TraesCS6A01G198600.1 | Wheat | nucleus, plastid | 28.61 | 51.35 |
| Os02t0565000-01 | Rice | nucleus | 31.33 | 49.64 |
| TraesCS6D01G184500.2 | Wheat | nucleus | 30.27 | 48.32 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 29.97 | 47.84 |
| HORVU6Hr1G050140.1 | Barley | nucleus, plastid | 29.37 | 46.65 |
| Zm00001d025514_P001 | Maize | nucleus | 25.9 | 43.88 |
| Zm00001d003549_P001 | Maize | nucleus | 24.25 | 41.82 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 16.27 | 31.67 |
| Zm00001d030350_P001 | Maize | nucleus | 9.34 | 29.52 |
| CDY33246 | Canola | nucleus | 13.55 | 29.41 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 15.81 | 29.01 |
| Zm00001d043902_P001 | Maize | nucleus | 13.4 | 27.99 |
| Zm00001d011571_P001 | Maize | cytosol | 12.95 | 27.3 |
| CDY39101 | Canola | nucleus, plastid | 12.5 | 27.21 |
| KRH47662 | Soybean | nucleus, plastid | 15.06 | 27.17 |
| CDY39099 | Canola | nucleus | 12.95 | 27.13 |
| Bra021536.1-P | Field mustard | nucleus | 12.5 | 27.12 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 12.65 | 27.1 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 14.76 | 26.92 |
| CDY61477 | Canola | nucleus, plastid | 12.2 | 26.91 |
| KRH06239 | Soybean | nucleus | 14.91 | 26.76 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 16.27 | 26.73 |
| Zm00001d038994_P001 | Maize | cytosol | 13.55 | 26.24 |
| CDY02487 | Canola | nucleus, plastid | 11.9 | 25.65 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 11.6 | 25.58 |
| Solyc03g122030.1.1 | Tomato | nucleus | 13.86 | 25.34 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 13.86 | 24.66 |
| CDX75751 | Canola | nucleus | 13.7 | 24.46 |
| CDY08216 | Canola | nucleus | 11.9 | 24.09 |
| Bra014370.1-P | Field mustard | nucleus | 12.05 | 23.88 |
| CDY26148 | Canola | nucleus, plastid | 12.2 | 22.69 |
| AT3G14180.1 | Thale cress | nucleus | 14.91 | 22.35 |
| CDY51405 | Canola | nucleus | 4.07 | 21.26 |
| AT1G54060.1 | Thale cress | nucleus | 12.2 | 21.15 |
| Bra030909.1-P | Field mustard | nucleus | 4.07 | 21.09 |
| Zm00001d011730_P001 | Maize | nucleus, plastid | 10.09 | 19.14 |
| CDY33093 | Canola | cytosol, plastid | 11.9 | 18.08 |
Protein Annotations
| MapMan:15.5.20 | Gene3D:2.30.180.10 | MapMan:21.4.1.1.3 | MapMan:26.6.1.4 | UniProt:A0A1D6N7H5 | ncoils:Coil |
| InterPro:FAS1_dom_sf | InterPro:FAS1_domain | InterPro:IPR000782 | InterPro:IPR036378 | ProteinID:ONM36540.1 | PFAM:PF02469 |
| PFAM:PF13837 | PFscan:PS50213 | PANTHER:PTHR32382 | PANTHER:PTHR32382:SF10 | InterPro:Plant_FLA | SUPFAM:SSF82153 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000842E94B | EnsemblPlantsGene:Zm00001d042917 | EnsemblPlants:Zm00001d042917_P001 | EnsemblPlants:Zm00001d042917_T001 |
| SEG:seg | : | : | : | : | : |
Description
Trihelix-transcription factor 27Trihelix transcription factor ASIL2
Coordinates
chr3:+:183872097..183874894
Molecular Weight (calculated)
70515.8 Da
IEP (calculated)
10.107
GRAVY (calculated)
-0.164
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGLGAAPV SSCLALGAAA AVLLVAAALP SPASGVDVTA VLSAFPNFAD FARLLASTPV ASELSGRSSL TLLAVPNANL PQSPSAFVAS AGADIADVLR
101: YHVLLEYLFP FDLARLSPSG KLVTTLFQTT GRAPSDFGAV NLTVGGNSTV VVRSPAPSPG SNATVLGAVT AVPYNLSVLA VGGLIIPSGF DLAASESRPP
201: PPVNITRVLT DARGFNVAAS MLQASGVASE FEADEHSAGI TVFVPTDDAF AGLPATDRLQ SLPAERKAVV LRFHVLHSYY PLGSLESSTA SATSSTLIDA
301: WGERFVALDR GSLRHPQWQE VAEVVSSRDS YSKAPKSDVQ CKNRIDTLKK KYKVEKAKHD SDWRYFDRLD DLLAPVLLKP NSSSSSAAAA TAAAAARSAG
401: PMVPPRINFP QRTRTPLHSS AGAKWRMPSP LPQPSASSDS SDGFPPSAVA NGKRQRVEEP AAAAADNGAE SSVSRAQGLR ELAQAIRRLG EVYERVESAK
501: RDQELRMERE RLDSARQLEE QRVQFSTSMP RSSRITRTAQ APPGAMTTAA TRTRKLRRMR KTKRKRASDC SPLQQWNVFA VSKVLLPKEM FGRGDSGNTA
601: MAPPSVAMAP RDAGSEKTPQ TRLSSPPDLH SEDSESSASL LTAKGTWWCI GLMYLQLHLL LSLV
101: YHVLLEYLFP FDLARLSPSG KLVTTLFQTT GRAPSDFGAV NLTVGGNSTV VVRSPAPSPG SNATVLGAVT AVPYNLSVLA VGGLIIPSGF DLAASESRPP
201: PPVNITRVLT DARGFNVAAS MLQASGVASE FEADEHSAGI TVFVPTDDAF AGLPATDRLQ SLPAERKAVV LRFHVLHSYY PLGSLESSTA SATSSTLIDA
301: WGERFVALDR GSLRHPQWQE VAEVVSSRDS YSKAPKSDVQ CKNRIDTLKK KYKVEKAKHD SDWRYFDRLD DLLAPVLLKP NSSSSSAAAA TAAAAARSAG
401: PMVPPRINFP QRTRTPLHSS AGAKWRMPSP LPQPSASSDS SDGFPPSAVA NGKRQRVEEP AAAAADNGAE SSVSRAQGLR ELAQAIRRLG EVYERVESAK
501: RDQELRMERE RLDSARQLEE QRVQFSTSMP RSSRITRTAQ APPGAMTTAA TRTRKLRRMR KTKRKRASDC SPLQQWNVFA VSKVLLPKEM FGRGDSGNTA
601: MAPPSVAMAP RDAGSEKTPQ TRLSSPPDLH SEDSESSASL LTAKGTWWCI GLMYLQLHLL LSLV
001: MANVISISHF TLLALPYLLL LLSSTAAAIN VTAVLSSFPN LSSFSNLLVS SGIAAELSGR NSLTLLAVPN SQFSSASLDL TRRLPPSALA DLLRFHVLLQ
101: FLSDSDLRRI PPSGSAVTTL YEASGRTFFG SGSVNVTRDP ASGSVTIGSP ATKNVTVLKL LETKPPNITV LTVDSLIVPT GIDITASETL TPPPTSTSLS
201: PPPAGINLTQ ILINGHNFNV ALSLLVASGV ITEFENDERG AGITVFVPTD SAFSDLPSNV NLQSLPAEQK AFVLKFHVLH SYYTLGSLES ITNPVQPTLA
301: TEEMGAGSYT LNISRVNGSI VTINSGVVLA VVTQTAFDQN PVSVFGVSKV LLPKELFPKS GQPVATAPPQ EISLSPESSS EQPSRLVSPP REIVSSGAVK
401: RPLGFLVLWC WCIAFCYVLV
101: FLSDSDLRRI PPSGSAVTTL YEASGRTFFG SGSVNVTRDP ASGSVTIGSP ATKNVTVLKL LETKPPNITV LTVDSLIVPT GIDITASETL TPPPTSTSLS
201: PPPAGINLTQ ILINGHNFNV ALSLLVASGV ITEFENDERG AGITVFVPTD SAFSDLPSNV NLQSLPAEQK AFVLKFHVLH SYYTLGSLES ITNPVQPTLA
301: TEEMGAGSYT LNISRVNGSI VTINSGVVLA VVTQTAFDQN PVSVFGVSKV LLPKELFPKS GQPVATAPPQ EISLSPESSS EQPSRLVSPP REIVSSGAVK
401: RPLGFLVLWC WCIAFCYVLV
Arabidopsis Description
FLA4Fasciclin-like arabinogalactan protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.