Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g122030.1.1 | Tomato | nucleus | 93.83 | 96.42 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 66.76 | 68.41 |
| KRH06239 | Soybean | nucleus | 63.54 | 64.05 |
| KRH47662 | Soybean | nucleus, plastid | 62.73 | 63.59 |
| CDX75751 | Canola | nucleus | 50.94 | 51.08 |
| CDY39101 | Canola | nucleus, plastid | 40.48 | 49.51 |
| CDY39099 | Canola | nucleus | 41.55 | 48.9 |
| Bra021536.1-P | Field mustard | nucleus | 39.95 | 48.69 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 40.21 | 48.39 |
| CDY33246 | Canola | nucleus | 39.68 | 48.37 |
| AT3G14180.1 | Thale cress | nucleus | 53.89 | 45.37 |
| CDY61477 | Canola | nucleus, plastid | 36.19 | 44.85 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 35.12 | 43.52 |
| CDY02487 | Canola | nucleus, plastid | 35.92 | 43.51 |
| CDY51405 | Canola | nucleus | 14.48 | 42.52 |
| CDY08216 | Canola | nucleus | 37.27 | 42.38 |
| Bra014370.1-P | Field mustard | nucleus | 37.53 | 41.79 |
| Bra030909.1-P | Field mustard | nucleus | 14.21 | 41.41 |
| AT1G54060.1 | Thale cress | nucleus | 41.82 | 40.73 |
| CDY26148 | Canola | nucleus, plastid | 38.07 | 39.78 |
| PGSC0003DMT400077199 | Potato | cytosol | 28.95 | 39.56 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 35.66 | 39.0 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 35.39 | 36.46 |
| PGSC0003DMT400026432 | Potato | cytosol | 27.88 | 35.99 |
| Os04t0445600-00 | Rice | nucleus | 36.46 | 32.61 |
| Zm00001d025514_P001 | Maize | nucleus | 34.05 | 32.4 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 35.92 | 32.21 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 35.66 | 32.2 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 35.66 | 31.97 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 34.58 | 31.93 |
| Zm00001d003549_P001 | Maize | nucleus | 32.71 | 31.69 |
| EES12241 | Sorghum | nucleus | 34.32 | 31.37 |
| TraesCS6A01G198600.1 | Wheat | nucleus, plastid | 30.83 | 31.08 |
| CDY33093 | Canola | cytosol, plastid | 34.85 | 29.75 |
| Os02t0565000-01 | Rice | nucleus | 33.24 | 29.59 |
| TraesCS6D01G184500.2 | Wheat | nucleus | 32.44 | 29.09 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 32.44 | 29.09 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 30.83 | 28.61 |
| HORVU6Hr1G050140.1 | Barley | nucleus, plastid | 31.9 | 28.47 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 29.49 | 27.71 |
| PGSC0003DMT400020194 | Potato | plastid | 28.42 | 27.68 |
| Zm00001d010753_P001 | Maize | nucleus | 23.32 | 26.52 |
| KXG30464 | Sorghum | nucleus, plastid | 29.49 | 26.07 |
| PGSC0003DMT400080593 | Potato | nucleus | 23.32 | 23.26 |
| PGSC0003DMT400070593 | Potato | nucleus | 21.72 | 23.01 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 13.4 | 22.32 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 24.66 | 13.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400088401 | EnsemblPlantsGene:PGSC0003DMG400037972 | EntrezGene:102604143 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF4 | PFAM:PF13837 |
| PGSC:PGSC0003DMG400037972 | RefSeq:XP_006342943.1 | SEG:seg | UniParc:UPI000295F70E | UniProt:M1DFW4 | MapMan:15.5.20 |
Description
6b-interacting protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400037972]
Coordinates
chr3:+:61249033..61250154
Molecular Weight (calculated)
41272.4 Da
IEP (calculated)
9.894
GRAVY (calculated)
-1.010
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MENDEETQSH QSGGSGSPES PRSNGRITVT VASAPPQNTL TLALPIQQSR PAGASGGGGS GGGGREDCWS EEATAVLIEA WGERYMELSR GNLKQKHWKD
101: VADIVCRQED YRKTPKTDIQ CKNRIDTVKK KYKLEKSKIA AGQGPSKWPF FDKLDMLIGP TAKINPTVAA GPSNLYSGNQ HVPMGIPMGV RSLPQLRQHQ
201: QLQKQKQPSR KRPHMDSDTS ESESEPDLSP ASTDSFPPGT FQKKRPRFQK EMLNSSALRQ GGIGIGEASG KEGGNKNWGN SVRELTQAIL KFGEAYEQTE
301: SAKLQQMVEM EKQRMKFAKE MELQRMQFFM NTQLEISQLK HRRSGNSNHH SNNHAAATSN HNNNNNNNSD SSI
101: VADIVCRQED YRKTPKTDIQ CKNRIDTVKK KYKLEKSKIA AGQGPSKWPF FDKLDMLIGP TAKINPTVAA GPSNLYSGNQ HVPMGIPMGV RSLPQLRQHQ
201: QLQKQKQPSR KRPHMDSDTS ESESEPDLSP ASTDSFPPGT FQKKRPRFQK EMLNSSALRQ GGIGIGEASG KEGGNKNWGN SVRELTQAIL KFGEAYEQTE
301: SAKLQQMVEM EKQRMKFAKE MELQRMQFFM NTQLEISQLK HRRSGNSNHH SNNHAAATSN HNNNNNNNSD SSI
001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
Arabidopsis Description
ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.