CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88046
EER90739
EER92459
EER92590
EER93786
EER96837
EES01406
EES01418
EES03335
EES03615
EES04270
EES07590
EES07748
EES07862
EES10818
EES15479
EES19859
KXG22792
KXG23778
KXG23779
KXG25366
KXG33681
KXG34535
KXG39943
OQU79022
OQU85418
OQU91338
OQU92832

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54060.1	EER93786	AT1G49410.1	21798944
AT1G54060.1	EER88046	AT1G57620.1	21798944
AT1G54060.1	EER96837	AT1G57620.1	21798944
AT1G54060.1	EES07590	AT1G57620.1	21798944
AT1G54060.1	KXG25366	AT1G57620.1	21798944
AT1G54060.1	EES01418	AT2G31490.1	21798944
AT1G54060.1	EES03615	AT2G31490.1	21798944
AT1G54060.1	OQU91338	AT2G31490.1	21798944
AT1G54060.1	EER92590	AT2G32840.1	21798944
AT1G54060.1	KXG23778	AT2G39705.1	21798944
AT1G54060.1	KXG23779	AT2G39705.1	21798944
AT1G54060.1	KXG33681	AT2G39705.1	21798944
AT1G54060.1	OQU92832	AT2G39705.1	21798944
AT1G54060.1	EER90739	AT3G09630.1	21798944
AT1G54060.1	KXG34535	AT3G09630.1	21798944
AT1G54060.1	EES15479	AT3G24860.1	21798944
AT1G54060.1	EES01406	AT3G29160.1	21798944
AT1G54060.1	EES19859	AT3G29160.1	21798944
AT1G54060.1	OQU85418	AT4G17270.1	21798944
AT1G54060.1	EER92459	AT4G32260.1	21798944
AT1G54060.1	EER90739	AT5G02870.1	21798944
AT1G54060.1	KXG34535	AT5G02870.1	21798944
AT1G54060.1	EES04270	AT5G41520.1	21798944
AT1G54060.1	EES10818	AT5G41520.1	21798944
AT1G54060.1	EES03335	AT5G60160.1	21798944
AT1G54060.1	EES07748	AT5G62030.1	21798944
AT3G14180.1	OQU79022	AT3G01690.1	21798944
AT3G14180.1	EES07862	AT3G08780.1	21798944
AT3G14180.1	KXG22792	AT3G08780.1	21798944
AT3G14180.1	EER90739	AT3G09630.1	21798944
AT3G14180.1	KXG34535	AT3G09630.1	21798944
AT3G14180.1	KXG39943	AT5G67620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016876_P001	Maize	nucleus, plastid	86.26	90.55
TraesCS6A01G198600.1	Wheat	nucleus, plastid	60.43	68.92
Os02t0565000-01	Rice	nucleus	68.01	68.5
Zm00001d010753_P001	Maize	nucleus	52.61	67.68
TraesCS6D01G184500.2	Wheat	nucleus	65.4	66.35
TraesCS6B01G230000.1	Wheat	nucleus	65.4	66.35
HORVU6Hr1G050140.1	Barley	nucleus, plastid	64.93	65.55
EES12241	Sorghum	nucleus	50.47	52.21
Zm00001d042917_P001	Maize	golgi, plasma membrane	57.11	36.3
GSMUA_Achr8P23650_001	Banana	nucleus	29.15	36.07
CDY33246	Canola	nucleus	25.36	34.97
CDY39101	Canola	nucleus, plastid	24.17	33.44
GSMUA_Achr9P14340_001	Banana	nucleus	28.67	33.43
Bra021534.1-P	Field mustard	nucleus, plastid	24.41	33.23
Bra021536.1-P	Field mustard	nucleus	23.93	33.01
KRH06239	Soybean	nucleus	28.91	32.97
CDY39099	Canola	nucleus	24.64	32.81
KRH47662	Soybean	nucleus, plastid	28.44	32.61
VIT_09s0002g00720.t01	Wine grape	nucleus	27.96	32.42
Bra037960.1-P	Field mustard	nucleus, plastid	22.75	31.89
CDY61477	Canola	nucleus, plastid	22.75	31.89
GSMUA_Achr3P05880_001	Banana	nucleus	30.33	31.68
CDY02487	Canola	nucleus, plastid	22.27	30.52
CDX75751	Canola	nucleus	26.78	30.38
CDY08216	Canola	nucleus	23.46	30.18
Solyc03g122030.1.1	Tomato	nucleus	25.83	30.03
Bra014370.1-P	Field mustard	nucleus	23.46	29.55
PGSC0003DMT400088401	Potato	nucleus, plastid	26.07	29.49
EES03423	Sorghum	cytosol	22.04	29.34
CDY26148	Canola	nucleus, plastid	23.93	28.29
EES18672	Sorghum	nucleus	22.75	27.67
AT3G14180.1	Thale cress	nucleus	27.73	26.41
AT1G54060.1	Thale cress	nucleus	23.46	25.85
CDY51405	Canola	nucleus	7.11	23.62
CDY33093	Canola	cytosol, plastid	22.27	21.51
Bra030909.1-P	Field mustard	nucleus	6.4	21.09
OQU87430	Sorghum	nucleus, plastid	17.54	21.08

Protein Annotations

EnsemblPlants:KXG30464	EnsemblPlantsGene:SORBI_3004G184400	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF12	PFAM:PF13837
ProteinID:KXG30464	ProteinID:KXG30464.1	SEG:seg	UniParc:UPI0007F19C36	UniProt:A0A194YQF9	MapMan:15.5.20

Description

hypothetical protein

Coordinates

chr4:-:53763702..53764970

Molecular Weight (calculated)

44892.8 Da

IEP (calculated)

8.453

GRAVY (calculated)

-0.798

Length

422 amino acids

Sequence
(BLAST)

001: MDDDGAASRS PSRSPSRSPS RSPSPLPVAD PVTVAAAPPG HVAVAIPLRK PSPSSGGGRE DAWSDGATST LIDAWGERFV ALGRGSLRHP QWQEVAEVVS
101: SRDGYSKAPK SDVQCKNRID TLKKKYKIEK AKHDSDWRYF DRLDDLLAPV LKLNSSSSSS AAAAAAAAAA AAARSAGPMV PPRINFPQRT RTPLHSSAGG
201: KRRMPPSPPP QPSASSDSSD GFPPSSGVAN GKRLQRVEEP LAVAAANGGA ESSSVSRAQG LRDLAQAIRR LGEVYERVEN ARREQELRME RDRLESARQM
301: EEQRVQFFLK MQMELSKAAM GGGDAAATTA PMAMAVPIPA DGNGTRRAGV TAEVATSSNH RVRYRIKAGS SRHHHPAPPQ QAHYQNSTSP TGGDGDGNGS
401: DSDNKEAAQE EDAEDEEEEE SQ

Best Arabidopsis Sequence Match ( AT3G11100.1 )
(BLAST)

001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL

Arabidopsis Description

AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.