CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95951
EES00126
EES11990
EES18624
KXG30263
KXG37365
OQU77594
OQU86087
OQU87370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	EES18624	AT1G17970.1	21798944
AT3G09630.1	OQU87370	AT1G17970.1	21798944
AT3G09630.1	EES00126	AT3G13720.1	21798944
AT3G09630.1	OQU77594	AT3G13720.1	21798944
AT3G09630.1	EER95951	AT3G22960.1	21798944
AT3G09630.1	KXG37365	AT3G22960.1	21798944
AT5G02870.1	EES11990	AT5G22310.1	21798944
AT5G02870.1	KXG30263	AT5G22310.1	21798944
AT5G02870.1	OQU86087	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	94.55	94.55
Os03t0796501-00	Rice	nucleus	87.38	87.38
KXG34535	Sorghum	cytosol	87.38	87.38
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	84.9	84.9
TraesCS1D01G264200.1	Wheat	cytosol	84.9	84.9
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	84.9	84.9
TraesCS5D01G446300.2	Wheat	cytosol	84.65	84.65
TraesCS5A01G439100.2	Wheat	cytosol, unclear	84.65	84.65
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	83.66	83.66
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	84.41	83.58
HORVU4Hr1G075710.1	Barley	mitochondrion	84.41	80.42
GSMUA_Achr5P03060_001	Banana	cytosol	78.22	77.83
GSMUA_Achr4P28500_001	Banana	cytosol	21.53	77.68
GSMUA_Achr4P21120_001	Banana	cytosol	76.73	76.35
Bra009560.1-P	Field mustard	cytosol	73.51	73.15
AT3G09630.1	Thale cress	cytosol	73.51	73.15
CDX70339	Canola	cytosol	73.27	72.91
PGSC0003DMT400028707	Potato	cytosol	70.54	72.89
CDY10418	Canola	cytosol	73.27	72.73
CDY41596	Canola	cytosol	72.77	72.41
CDY44721	Canola	cytosol, extracellular	72.77	72.41
AT5G02870.1	Thale cress	cytosol	72.77	72.24
CDX80842	Canola	cytosol	72.52	72.17
Bra005749.1-P	Field mustard	cytosol	72.28	71.92
Bra029780.1-P	Field mustard	cytosol	71.78	71.43
CDY22192	Canola	cytosol	69.06	71.36
CDY41301	Canola	cytosol	69.06	71.36
CDY11231	Canola	cytosol	68.81	70.92
PGSC0003DMT400045381	Potato	cytosol	71.29	70.76
Solyc09g007250.2.1	Tomato	nucleus	71.04	70.69
CDX73989	Canola	cytosol	71.04	70.69
PGSC0003DMT400071725	Potato	cytosol	70.79	70.44
Bra001302.1-P	Field mustard	cytosol	70.79	70.44
Solyc10g084350.1.1	Tomato	nucleus	35.89	70.39
GSMUA_Achr7P01370_001	Banana	cytosol	10.89	69.84
GSMUA_Achr4P28490_001	Banana	nucleus	10.64	68.25
Bra034075.1-P	Field mustard	cytosol	64.11	66.58
Solyc10g086010.1.1	Tomato	extracellular	71.29	66.21
GSMUA_Achr2P12650_001	Banana	plastid	50.99	51.37
Bra006658.1-P	Field mustard	plastid	9.65	39.39
VIT_02s0087g00870.t01	Wine grape	cytosol	11.88	39.02
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	69.06	35.82
KRG89783	Soybean	plastid	4.46	18.75

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	EntrezGene:8081259	UniProt:C5WX74	EnsemblPlants:EER90739	ProteinID:EER90739
ProteinID:EER90739.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574	PFAM:PF00573	PFAM:PF14374
ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS
InterPro:Ribosomal_L4_dom_sf	EnsemblPlantsGene:SORBI_3001G057300	SUPFAM:SSF52166	unigene:Sbi.10444	UniParc:UPI0001A82115	RefSeq:XP_002463741.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:4327561..4330027

Molecular Weight (calculated)

44447.1 Da

IEP (calculated)

11.223

GRAVY (calculated)

-0.387

Length

404 amino acids

Sequence
(BLAST)

001: MAAAARPLVS VRALEGDMAT DSAGIPLADV LRAPLRPDIV RFVHKLLSCN SRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQAAFGNMCR
101: GGRMFAPTKI WRRWHRRVNI HLRRVAIASA LSATTVPSLV LARGHRVESV PELPLVVSDS AESIEKTTQA IKILKQLGAY ADAEKAKDSV GIRPGKGKMR
201: NRRYINRKGP LVVYGTEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTESA FKKLDEVYGT FDTPSAKKKG FVLPRAKMAN ADLSRLINSD
301: EVQSVVKPIN KEVKRREPRK NPLKNMAAVL KLNPYLGTAR KMAALAEAAR VNARKQKLDS KRTKLSPEEA SKVKAAGKAW YKTMISDSDY TEYENFTKWL
401: GVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.