Factsheet for GSMUA_Achr4P28500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P23200_001
GSMUA_Achr2P17520_001
GSMUA_Achr3P29390_001
GSMUA_Achr4P11130_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P09070_001
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001
GSMUA_Achr7P16760_001
GSMUA_Achr9P21480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	GSMUA_Achr1P23200_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr3P29390_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr4P11130_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr9P21480_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr7P09070_001	AT3G13720.1	21798944
AT3G09630.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT5G02870.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT5G02870.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944
AT5G02870.1	GSMUA_Achr7P14310_001	AT5G58720.1	21798944
AT5G02870.1	GSMUA_Achr7P14320_001	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03060_001	Banana	cytosol	89.29	24.63
GSMUA_Achr4P21120_001	Banana	cytosol	86.61	23.89
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	80.36	22.28
Zm00001d013076_P001	Maize	plasma membrane	80.36	22.28
Bra005749.1-P	Field mustard	cytosol	78.57	21.67
EER90739	Sorghum	cytosol, plastid	77.68	21.53
CDX80842	Canola	cytosol	77.68	21.43
CDY10418	Canola	cytosol	77.68	21.38
Bra009560.1-P	Field mustard	cytosol	76.79	21.18
CDX70339	Canola	cytosol	76.79	21.18
CDY11231	Canola	cytosol	74.11	21.17
AT5G02870.1	Thale cress	cytosol	76.79	21.13
Zm00001d007824_P001	Maize	plasma membrane	75.89	21.04
Os03t0796501-00	Rice	nucleus	75.89	21.04
KXG34535	Sorghum	cytosol	75.89	21.04
AT3G09630.1	Thale cress	cytosol	75.89	20.94
Solyc09g007250.2.1	Tomato	nucleus	75.89	20.94
PGSC0003DMT400071725	Potato	cytosol	75.89	20.94
Zm00001d018957_P001	Maize	plasma membrane	75.0	20.84
Os07t0180900-01	Rice	nucleus, plasma membrane	74.11	20.49
CDY41596	Canola	cytosol	74.11	20.44
CDY44721	Canola	cytosol, extracellular	74.11	20.44
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	73.21	20.3
CDX73989	Canola	cytosol	73.21	20.2
Bra029780.1-P	Field mustard	cytosol	73.21	20.2
TraesCS5D01G446300.2	Wheat	cytosol	72.32	20.05
TraesCS5A01G439100.2	Wheat	cytosol, unclear	72.32	20.05
TraesCS1D01G264200.1	Wheat	cytosol	72.32	20.05
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	72.32	20.05
Bra001302.1-P	Field mustard	cytosol	72.32	19.95
PGSC0003DMT400045381	Potato	cytosol	72.32	19.9
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	72.32	19.85
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	71.43	19.8
TraesCS2A01G253600.1	Wheat	cytosol	70.54	19.6
PGSC0003DMT400028707	Potato	cytosol	67.86	19.44
HORVU4Hr1G075710.1	Barley	mitochondrion	73.21	19.34
Solyc10g086010.1.1	Tomato	extracellular	72.32	18.62
CDY41301	Canola	cytosol	64.29	18.41
CDY22192	Canola	cytosol	64.29	18.41
Bra034075.1-P	Field mustard	cytosol	60.71	17.48
GSMUA_Achr2P12650_001	Banana	plastid	55.36	15.46
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	72.32	10.4
KRG89783	Soybean	plastid	1.79	2.08
Solyc10g084350.1.1	Tomato	nucleus	2.68	1.46
Bra006658.1-P	Field mustard	plastid	0.89	1.01
GSMUA_Achr4P28490_001	Banana	nucleus	0.0	0.0
GSMUA_Achr7P01370_001	Banana	cytosol	0.0	0.0
VIT_02s0087g00870.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.1370.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G28500_001	EnsemblPlants:GSMUA_Achr4P28500_001
EnsemblPlants:GSMUA_Achr4T28500_001	InterPro:IPR023574	UniProt:M0SSW2	PFAM:PF00573	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI000295ECB9	:	:

Description

60S ribosomal protein L4-2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28500_001]

Coordinates

chr4:-:26913918..26914513

Molecular Weight (calculated)

11642.9 Da

IEP (calculated)

11.698

GRAVY (calculated)

-0.395

Length

112 amino acids

Sequence
(BLAST)

001: MAAAAAVRPL VTVQALEGDM TTDSPASVPL PDVLKAPIRP DVVRFVHANL SKNSRQPYAV SKRAGHQTSA ESWGTGRAVS RIPRVPGGGT HRAGQGAFGN
101: MCRQGQPGHP PG

Best Arabidopsis Sequence Match ( AT5G02870.2 )
(BLAST)

001: MVASAAARPL VTVQGLDGDM STDQSTTVTL PDVMTAPVRP DIVNFVHAQI SNNSRQPYAV SKKAGHQTSA ESWGTGRAVS RIPRVPGGGT HRAGQAAFGN
101: MCRGGRMFAP TKIWRRWHRR VNVNMKRHAI VSAIAATAVP ALVMARGHKI ENVPEMPLVV SDSAEAVEKT SAAIKVLKQI GAYDDAEKAK NSIGIRPGKG
201: KMRNRRYISR KGPLVVFGTE GAKIVKAFRN LPGVELCHVE RLNLLKLAPG GHLGRFVIWT KSAFEKLESI YGSFEKPSEK KKGYVLPRAK MVNADLARII
301: NSDEVQSVVN PIKDGSKRAV LKKNPLKNLN VMFKLNPYAK TAKRMSLLAE ASRVKAKKEK LEKKRKVVTK EAQAIKAAGK AWYQTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4D60S ribosomal protein L4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49691]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.