Factsheet for Zm00001d013076_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23508561
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d011636_P001
Zm00001d017254_P002
Zm00001d018961_P002
Zm00001d025208_P002
Zm00001d034443_P001
Zm00001d037747_P001
Zm00001d038909_P001
Zm00001d039321_P008
Zm00001d039455_P002
Zm00001d043784_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Zm00001d011636_P001	AT1G17970.1	21798944
AT3G09630.1	Zm00001d038909_P001	AT1G17970.1	21798944
AT3G09630.1	Zm00001d043784_P002	AT1G17970.1	21798944
AT3G09630.1	Zm00001d037747_P001	AT3G13720.1	21798944
AT3G09630.1	Zm00001d039455_P002	AT3G13720.1	21798944
AT3G09630.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G09630.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT5G02870.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT5G02870.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT5G02870.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT5G02870.1	Zm00001d017254_P002	AT5G58720.1	21798944
AT5G02870.1	Zm00001d039321_P008	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	95.05	95.05
Zm00001d007824_P001	Maize	plasma membrane	88.37	88.37
Os03t0796501-00	Rice	nucleus	87.62	87.62
Zm00001d018957_P001	Maize	plasma membrane	86.88	87.1
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	85.64	85.64
TraesCS1D01G264200.1	Wheat	cytosol	85.64	85.64
TraesCS5D01G446300.2	Wheat	cytosol	85.4	85.4
TraesCS5A01G439100.2	Wheat	cytosol, unclear	85.4	85.4
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	85.4	85.4
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	84.16	84.16
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	84.9	84.07
HORVU4Hr1G075710.1	Barley	mitochondrion	84.9	80.9
GSMUA_Achr4P28500_001	Banana	cytosol	22.28	80.36
GSMUA_Achr5P03060_001	Banana	cytosol	78.47	78.08
GSMUA_Achr4P21120_001	Banana	cytosol	77.23	76.85
GSMUA_Achr4P28490_001	Banana	nucleus	11.39	73.02
AT3G09630.1	Thale cress	cytosol	73.27	72.91
PGSC0003DMT400028707	Potato	cytosol	70.54	72.89
Bra009560.1-P	Field mustard	cytosol	72.77	72.41
CDX70339	Canola	cytosol	72.52	72.17
CDY10418	Canola	cytosol	72.52	71.99
CDY41596	Canola	cytosol	72.28	71.92
CDY44721	Canola	cytosol, extracellular	72.28	71.92
Solyc09g007250.2.1	Tomato	nucleus	72.28	71.92
CDX80842	Canola	cytosol	72.28	71.92
AT5G02870.1	Thale cress	cytosol	72.28	71.74
Bra005749.1-P	Field mustard	cytosol	72.03	71.67
PGSC0003DMT400071725	Potato	cytosol	72.03	71.67
CDY41301	Canola	cytosol	69.31	71.61
CDY22192	Canola	cytosol	69.31	71.61
GSMUA_Achr7P01370_001	Banana	cytosol	11.14	71.43
Bra029780.1-P	Field mustard	cytosol	71.29	70.94
Solyc10g084350.1.1	Tomato	nucleus	36.14	70.87
CDY11231	Canola	cytosol	68.56	70.66
PGSC0003DMT400045381	Potato	cytosol	71.04	70.52
CDX73989	Canola	cytosol	70.79	70.44
Bra001302.1-P	Field mustard	cytosol	70.54	70.2
Bra034075.1-P	Field mustard	cytosol	65.1	67.61
Solyc10g086010.1.1	Tomato	extracellular	71.04	65.98
GSMUA_Achr2P12650_001	Banana	plastid	51.73	52.12
Bra006658.1-P	Field mustard	plastid	10.15	41.41
VIT_02s0087g00870.t01	Wine grape	cytosol	11.88	39.02
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	68.81	35.69
KRG89783	Soybean	plastid	4.21	17.71

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	ProteinID:AQK62352.1	UniProt:B4F9G0	EMBL:BT033748	EMBL:BT067882
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939
PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf
SUPFAM:SSF52166	UniParc:UPI00017B6112	EnsemblPlantsGene:Zm00001d013076	EnsemblPlants:Zm00001d013076_P001	EnsemblPlants:Zm00001d013076_T001	SEG:seg

Description

60S ribosomal protein L4-1

Coordinates

chr5:+:4379338..4381854

Molecular Weight (calculated)

44342.0 Da

IEP (calculated)

11.268

GRAVY (calculated)

-0.371

Length

404 amino acids

Sequence
(BLAST)

001: MAASARPLVT VRALEGDMAT DSAGVPLADV LRAPIRPDIV RFVHKLLSCN SRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQGAFGNMCR
101: GGRMFAPTKI WRRWHRRVNI HLRRVAIASA LSATAVPSLV LARGHRVESV PELPLVVSDS AESIEKTAQA INILKQLGAY ADAEKAKDSV GIRPGKGKMR
201: NRRYINRKGP LVVYGTEGSK VVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTECA FKKLDEVYGT FNAPSAKKKG FVLPRPKMAN ADLSRLINSD
301: EVQSVVKPIN KDVKRREPRK NPLKNMAAVL KLNPYLGTAR KMAALAEAAR VKARKQKLDS KRTKLSPEEA SKVKAAGKAW YKTMVSDSDY TEFENFTKWL
401: GVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.