Factsheet for AT5G02870.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G09630.1	Thale cress	cytosol	95.09	95.32
CDY10418	Canola	cytosol	94.84	94.84
Bra009560.1-P	Field mustard	cytosol	94.35	94.58
CDX70339	Canola	cytosol	94.1	94.33
CDX80842	Canola	cytosol	93.86	94.09
Bra005749.1-P	Field mustard	cytosol	93.61	93.84
CDY11231	Canola	cytosol	89.93	93.37
KRH19796	Soybean	nucleus	82.8	83.21
KRH32387	Soybean	nucleus	81.82	82.22
Solyc10g084350.1.1	Tomato	nucleus	41.03	81.07
PGSC0003DMT400028707	Potato	cytosol	76.9	80.05
GSMUA_Achr4P21120_001	Banana	cytosol	78.87	79.06
PGSC0003DMT400045381	Potato	cytosol	78.62	78.62
Solyc09g007250.2.1	Tomato	nucleus	77.89	78.08
GSMUA_Achr5P03060_001	Banana	cytosol	77.64	77.83
PGSC0003DMT400071725	Potato	cytosol	77.64	77.83
GSMUA_Achr4P28500_001	Banana	cytosol	21.13	76.79
GSMUA_Achr4P28490_001	Banana	nucleus	11.55	74.6
GSMUA_Achr7P01370_001	Banana	cytosol	11.55	74.6
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	72.24	74.06
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	73.22	73.76
Solyc10g086010.1.1	Tomato	extracellular	78.62	73.56
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	72.97	73.51
TraesCS5A01G439100.2	Wheat	cytosol, unclear	72.97	73.51
TraesCS1D01G264200.1	Wheat	cytosol	72.97	73.51
KRG95915	Soybean	endoplasmic reticulum	77.64	73.49
TraesCS5D01G446300.2	Wheat	cytosol	72.73	73.27
Zm00001d007824_P001	Maize	plasma membrane	72.48	73.02
EER90739	Sorghum	cytosol, plastid	72.24	72.77
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	72.73	72.55
KXG34535	Sorghum	cytosol	71.99	72.52
Zm00001d013076_P001	Maize	plasma membrane	71.74	72.28
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	71.5	72.03
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	71.25	71.78
Zm00001d018957_P001	Maize	plasma membrane	71.01	71.71
Os07t0180900-01	Rice	nucleus, plasma membrane	70.76	71.11
HORVU4Hr1G075710.1	Barley	mitochondrion	72.24	69.34
Os03t0796501-00	Rice	nucleus	68.55	69.06
TraesCS2A01G253600.1	Wheat	cytosol	68.3	68.98
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.53	56.67
VIT_15s0045g00110.t01	Wine grape	cytosol	30.22	56.16
GSMUA_Achr2P12650_001	Banana	plastid	50.86	51.62
VIT_00s0208g00020.t01	Wine grape	cytosol	29.48	30.93

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	EntrezGene:831756	UniProt:A0A178UAH8	ProteinID:AED90529.1	ArrayExpress:AT5G02870
EnsemblPlantsGene:AT5G02870	RefSeq:AT5G02870	TAIR:AT5G02870	RefSeq:AT5G02870-TAIR-G	EnsemblPlants:AT5G02870.1	TAIR:AT5G02870.1
EMBL:AY054479	EMBL:AY059886	EMBL:AY062452	EMBL:AY093384	EMBL:AY114639	EMBL:AY136320
EMBL:BT002088	ProteinID:CAB86041.1	ncoils:Coil	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009719
GO:GO:0009735	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022625	GO:GO:0022626
GO:GO:0030529	GO:GO:0042788	InterPro:IPR023574	RefSeq:NP_195907.1	ProteinID:OAO90763.1	UniProt:P49691
PFAM:PF00573	PFAM:PF14374	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000282	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001170	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007131	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0000000E1F	EMBL:Z17589
EMBL:Z18118	EMBL:Z18460	SEG:seg	:	:	:

Description

RPL4D60S ribosomal protein L4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49691]

Coordinates

chr5:+:657675..659800

Molecular Weight (calculated)

44724.5 Da

IEP (calculated)

11.010

GRAVY (calculated)

-0.375

Length

407 amino acids

Sequence
(BLAST)

001: MVASAAARPL VTVQGLDGDM STDQSTTVTL PDVMTAPVRP DIVNFVHAQI SNNSRQPYAV SKKAGHQTSA ESWGTGRAVS RIPRVPGGGT HRAGQAAFGN
101: MCRGGRMFAP TKIWRRWHRR VNVNMKRHAI VSAIAATAVP ALVMARGHKI ENVPEMPLVV SDSAEAVEKT SAAIKVLKQI GAYDDAEKAK NSIGIRPGKG
201: KMRNRRYISR KGPLVVFGTE GAKIVKAFRN LPGVELCHVE RLNLLKLAPG GHLGRFVIWT KSAFEKLESI YGSFEKPSEK KKGYVLPRAK MVNADLARII
301: NSDEVQSVVN PIKDGSKRAV LKKNPLKNLN VMFKLNPYAK TAKRMSLLAE ASRVKAKKEK LEKKRKVVTK EEAQAIKAAG KAWYQTMISD SDYTEFDNFT
401: KWLGASQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.