CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95951
EES00126
EES11990
EES18624
KXG30263
KXG37365
OQU77594
OQU86087
OQU87370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	EES18624	AT1G17970.1	21798944
AT3G09630.1	OQU87370	AT1G17970.1	21798944
AT3G09630.1	EES00126	AT3G13720.1	21798944
AT3G09630.1	OQU77594	AT3G13720.1	21798944
AT3G09630.1	EER95951	AT3G22960.1	21798944
AT3G09630.1	KXG37365	AT3G22960.1	21798944
AT5G02870.1	EES11990	AT5G22310.1	21798944
AT5G02870.1	KXG30263	AT5G22310.1	21798944
AT5G02870.1	OQU86087	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007824_P001	Maize	plasma membrane	96.53	96.53
Zm00001d018957_P001	Maize	plasma membrane	95.3	95.53
Os07t0180900-01	Rice	nucleus, plasma membrane	90.59	90.37
EER90739	Sorghum	cytosol, plastid	87.38	87.38
TraesCS2A01G253600.1	Wheat	cytosol	85.89	86.1
GSMUA_Achr5P03060_001	Banana	cytosol	77.72	77.34
GSMUA_Achr4P21120_001	Banana	cytosol	77.72	77.34
GSMUA_Achr7P01370_001	Banana	cytosol	11.88	76.19
GSMUA_Achr4P28500_001	Banana	cytosol	21.04	75.89
GSMUA_Achr4P28490_001	Banana	nucleus	11.39	73.02
AT3G09630.1	Thale cress	cytosol	73.02	72.66
CDY44721	Canola	cytosol, extracellular	72.77	72.41
CDY41596	Canola	cytosol	72.77	72.41
PGSC0003DMT400028707	Potato	cytosol	69.8	72.12
AT5G02870.1	Thale cress	cytosol	72.52	71.99
Bra009560.1-P	Field mustard	cytosol	72.03	71.67
CDX80842	Canola	cytosol	71.78	71.43
CDX70339	Canola	cytosol	71.78	71.43
Bra029780.1-P	Field mustard	cytosol	71.78	71.43
CDY10418	Canola	cytosol	71.78	71.25
Bra005749.1-P	Field mustard	cytosol	71.53	71.18
PGSC0003DMT400045381	Potato	cytosol	71.53	71.01
PGSC0003DMT400071725	Potato	cytosol	71.29	70.94
Solyc10g084350.1.1	Tomato	nucleus	36.14	70.87
Solyc09g007250.2.1	Tomato	nucleus	71.04	70.69
CDX73989	Canola	cytosol	71.04	70.69
CDY22192	Canola	cytosol	68.32	70.59
CDY41301	Canola	cytosol	68.32	70.59
Bra001302.1-P	Field mustard	cytosol	70.79	70.44
CDY11231	Canola	cytosol	67.82	69.9
Bra034075.1-P	Field mustard	cytosol	64.11	66.58
Solyc10g086010.1.1	Tomato	extracellular	71.29	66.21
GSMUA_Achr2P12650_001	Banana	plastid	49.51	49.88
Bra006658.1-P	Field mustard	plastid	9.9	40.4
VIT_02s0087g00870.t01	Wine grape	cytosol	11.39	37.4
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	69.31	35.94
KRG89783	Soybean	plastid	4.46	18.75

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	UniProt:A0A1B6Q9D0	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574
EnsemblPlants:KXG34535	ProteinID:KXG34535	ProteinID:KXG34535.1	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939
PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf
EnsemblPlantsGene:SORBI_3002G054000	SUPFAM:SSF52166	UniParc:UPI0001FCD70A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:5151222..5153776

Molecular Weight (calculated)

44504.4 Da

IEP (calculated)

11.159

GRAVY (calculated)

-0.377

Length

404 amino acids

Sequence
(BLAST)

001: MVAFSRPLVT VKALEGDMVT DAPGIALPPV FGAPIRPDVV RFAHKLLSCN KRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQGAFGNMCR
101: GGRMFAPTKI WRKWHHRVNI NLRRVAVASA LAATAVPALV QARGHRIETV PEMPLVISDS AESIEKTSQA LKILKQIGAY ADAEKAKDSV AIRPGKGKMR
201: NRRYINRKGP LIVYGTEGSK VVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTESA FKKLEEVYGS FDAPSLKKKG FVLPRPKMTN ADLGRIINSD
301: EVQSVVKPLN KEVKRREKRK NPLKNMAAVL KLNPYLGTAR KMATLAEAAR VKARKEKLDS KRTKLSPEEA AKVKAAGKAW YKTMISDSDY TEFENFTKWL
401: GVTQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.