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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • vacuole 1
  • cytosol 1
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr1P23200_001
GSMUA_Achr2P17520_001
GSMUA_Achr3P29390_001
GSMUA_Achr4P11130_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P09070_001
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001
GSMUA_Achr7P16760_001
GSMUA_Achr9P21480_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G09630.1 GSMUA_Achr1P23200_001 AT1G17970.1 21798944
AT3G09630.1 GSMUA_Achr3P29390_001 AT1G17970.1 21798944
AT3G09630.1 GSMUA_Achr4P11130_001 AT1G17970.1 21798944
AT3G09630.1 GSMUA_Achr9P21480_001 AT1G17970.1 21798944
AT3G09630.1 GSMUA_Achr7P09070_001 AT3G13720.1 21798944
AT3G09630.1 GSMUA_Achr2P17520_001 AT3G22960.1 21798944
AT3G09630.1 GSMUA_Achr4P21110_001 AT3G22960.1 21798944
AT3G09630.1 GSMUA_Achr4P28510_001 AT3G22960.1 21798944
AT3G09630.1 GSMUA_Achr7P16760_001 AT3G22960.1 21798944
AT5G02870.1 GSMUA_Achr6P08260_001 AT5G22310.1 21798944
AT5G02870.1 GSMUA_Achr6P16290_001 AT5G22310.1 21798944
AT5G02870.1 GSMUA_Achr7P14310_001 AT5G58720.1 21798944
AT5G02870.1 GSMUA_Achr7P14320_001 AT5G58720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr7P01370_001 Banana cytosol 88.89 88.89
Solyc10g084350.1.1 Tomato nucleus 77.78 23.79
Bra006658.1-P Field mustard plastid 36.51 23.23
GSMUA_Achr5P03060_001 Banana cytosol 92.06 14.29
GSMUA_Achr4P21120_001 Banana cytosol 88.89 13.79
PGSC0003DMT400028707 Potato cytosol 77.78 12.53
Bra034075.1-P Field mustard cytosol 76.19 12.34
Solyc09g007250.2.1 Tomato nucleus 77.78 12.07
PGSC0003DMT400045381 Potato cytosol 77.78 12.04
CDY41301 Canola cytosol 74.6 12.02
CDY22192 Canola cytosol 74.6 12.02
PGSC0003DMT400071725 Potato cytosol 76.19 11.82
AT3G09630.1 Thale cress cytosol 76.19 11.82
CDY41596 Canola cytosol 74.6 11.58
CDY44721 Canola cytosol, extracellular 74.6 11.58
Bra009560.1-P Field mustard cytosol 74.6 11.58
AT5G02870.1 Thale cress cytosol 74.6 11.55
CDY10418 Canola cytosol 74.6 11.55
CDY11231 Canola cytosol 71.43 11.48
Zm00001d018957_P001 Maize plasma membrane 73.02 11.41
Zm00001d013076_P001 Maize plasma membrane 73.02 11.39
KXG34535 Sorghum cytosol 73.02 11.39
Os07t0180900-01 Rice nucleus, plasma membrane 73.02 11.36
CDX70339 Canola cytosol 73.02 11.33
Bra001302.1-P Field mustard cytosol 73.02 11.33
Bra029780.1-P Field mustard cytosol 73.02 11.33
CDX73989 Canola cytosol 73.02 11.33
Solyc10g086010.1.1 Tomato extracellular 77.78 11.26
Zm00001d007824_P001 Maize plasma membrane 71.43 11.14
Bra005749.1-P Field mustard cytosol 71.43 11.08
CDX80842 Canola cytosol 71.43 11.08
Zm00001d034440_P001 Maize mitochondrion, plasma membrane 69.84 10.89
EER90739 Sorghum cytosol, plastid 68.25 10.64
TraesCS1B01G274700.2 Wheat cytosol, nucleus 66.67 10.4
TraesCS1D01G264200.1 Wheat cytosol 66.67 10.4
TraesCS5A01G439100.2 Wheat cytosol, unclear 66.67 10.4
TraesCS5B01G442100.1 Wheat cytosol, golgi, nucleus, unclear 66.67 10.4
TraesCS5D01G446300.2 Wheat cytosol 66.67 10.4
HORVU5Hr1G105870.1 Barley cytosol, plasma membrane 66.67 10.29
Os03t0796501-00 Rice nucleus 65.08 10.15
TraesCS1A01G354400.1 Wheat cytosol, extracellular, golgi, unclear 65.08 10.15
TraesCS2A01G253600.1 Wheat cytosol 61.9 9.68
HORVU4Hr1G075710.1 Barley mitochondrion 65.08 9.67
GSMUA_Achr2P12650_001 Banana plastid 34.92 5.49
CDY07934 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid 66.67 5.39
KRG89783 Soybean plastid 0.0 0.0
VIT_02s0087g00870.t01 Wine grape cytosol 0.0 0.0
GSMUA_Achr4P28500_001 Banana cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:GSMUA_Achr4P28490_001EnsemblPlants:GSMUA_Achr4T28490_001EnsemblPlantsGene:GSMUA_Achr4G28490_001ncoils:CoilPANTHER:PTHR19431PANTHER:PTHR19431:SF1
UniParc:UPI00029648BBUniProt:M0SSW1MapMan:35.2:::
Description
60S ribosomal protein L4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28490_001]
Coordinates
chr4:-:26910964..26913900
Molecular Weight (calculated)
7238.7 Da
IEP (calculated)
10.139
GRAVY (calculated)
-0.775
Length
63 amino acids
Sequence
(BLAST)
1: MALLAEAQRV KAKKEKLDKK RTELKKEEAT AIKAAGRAWY KTMVSDSDYA EFENFSKWLG VTQ
Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.