Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 3
- nucleus 1
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017254_P002 | Maize | cytosol | 51.61 | 30.97 |
| CDX71154 | Canola | nucleus | 55.91 | 11.82 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 58.06 | 11.04 |
| Bra006747.1-P | Field mustard | nucleus | 54.84 | 10.26 |
| CDY61025 | Canola | nucleus | 54.84 | 10.26 |
| CDY32688 | Canola | nucleus | 55.91 | 10.22 |
| KRG98291 | Soybean | nucleus | 55.91 | 10.22 |
| KRH30312 | Soybean | nucleus | 55.91 | 10.16 |
| Solyc06g007110.2.1 | Tomato | nucleus | 54.84 | 10.02 |
| CDY02832 | Canola | nucleus | 55.91 | 9.96 |
| Bra020357.1-P | Field mustard | nucleus | 55.91 | 9.94 |
| PGSC0003DMT400010646 | Potato | nucleus | 53.76 | 9.84 |
| AT5G58720.1 | Thale cress | nucleus | 54.84 | 9.83 |
| TraesCS3B01G177300.1 | Wheat | plastid | 54.84 | 9.46 |
| TraesCS3D01G158200.1 | Wheat | plastid | 54.84 | 8.64 |
| TraesCS3A01G150300.2 | Wheat | plastid | 53.76 | 8.47 |
| OQU86087 | Sorghum | nucleus | 51.61 | 8.08 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 54.84 | 7.41 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 35.48 | 6.67 |
| Zm00001d039321_P008 | Maize | nucleus | 41.94 | 5.96 |
| Os01t0225100-01 | Rice | nucleus | 2.15 | 0.71 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 1.08 | 0.23 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P14310_001 | EnsemblPlants:GSMUA_Achr7T14310_001 | EnsemblPlantsGene:GSMUA_Achr7G14310_001 | Gene3D:3.30.1370.110 | InterPro:IPR002625 | InterPro:Smr_dom |
| InterPro:Smr_dom_sf | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF01713 | PFscan:PS50828 | SMART:SM00463 |
| SUPFAM:SSF160443 | UniParc:UPI0002961874 | UniProt:M0THG8 | MapMan:35.1 | : | : |
Description
smr domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G14310_001]
Coordinates
chr7:-:11484103..11485137
Molecular Weight (calculated)
10204.5 Da
IEP (calculated)
6.941
GRAVY (calculated)
0.044
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MVTIDLHGQH VKQAIGLLKL HLLLFTYIPS VPYLKVITGC GADGVGKGKL KHAVLGLVEK EGVKWREENA GTLILSLDEP KEYSFVKCDT DSE
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.