Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G177300.1 | Wheat | plastid | 72.38 | 92.39 |
| TraesCS3D01G158200.1 | Wheat | plastid | 77.33 | 90.17 |
| TraesCS3A01G150300.2 | Wheat | plastid | 77.18 | 90.0 |
| Zm00001d017254_P002 | Maize | cytosol | 15.55 | 69.03 |
| OQU86087 | Sorghum | nucleus | 51.6 | 59.76 |
| Os01t0225100-01 | Rice | nucleus | 23.11 | 56.38 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 7.41 | 54.84 |
| Zm00001d039321_P008 | Maize | nucleus | 47.53 | 50.0 |
| CDX71154 | Canola | nucleus | 25.58 | 40.0 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 27.18 | 38.24 |
| Bra006747.1-P | Field mustard | nucleus | 26.6 | 36.82 |
| CDY61025 | Canola | nucleus | 26.6 | 36.82 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 22.82 | 36.34 |
| KRG98291 | Soybean | nucleus | 26.6 | 35.95 |
| CDY32688 | Canola | nucleus | 26.6 | 35.95 |
| Bra020357.1-P | Field mustard | nucleus | 27.18 | 35.76 |
| AT5G58720.1 | Thale cress | nucleus | 26.74 | 35.45 |
| CDY02832 | Canola | nucleus | 26.89 | 35.44 |
| KRH30312 | Soybean | nucleus | 26.02 | 34.96 |
| PGSC0003DMT400010646 | Potato | nucleus | 25.29 | 34.25 |
| Solyc06g007110.2.1 | Tomato | nucleus | 25.29 | 34.18 |
| HORVU2Hr1G098380.15 | Barley | cytosol, nucleus, plastid | 9.45 | 25.59 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 7.99 | 19.57 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G030600.8 | EnsemblPlantsGene:HORVU3Hr1G030600 | Gene3D:3.30.1370.110 | InterPro:DUF1771 | InterPro:IPR002625 | InterPro:Smr_dom |
| InterPro:Smr_dom_sf | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF08590 | PFscan:PS50828 | SEG:seg |
| SMART:SM00463 | SMART:SM01162 | SUPFAM:SSF160443 | UniParc:UPI000B471DEA | UniProt:A0A287KM25 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr3H:-:148077731..148084910
Molecular Weight (calculated)
74774.5 Da
IEP (calculated)
9.936
GRAVY (calculated)
-0.833
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: GRRRNPLPST LTGRRAYSMT RGARGRRGPH ANERSIFRRR PATPRESTRR LPPPSSSSPH RPLSPRLKRK RSGKSQNPHE KTPRRRGKIG EGKRRPAPEM
101: KPNAKKKSKK KKRASPAAAD GAAPAPPAAG SSPRSPLAET LTLAAAAAAS ETESSGSGSG GDASGYTRAF TSSSSGAAST SSFYAPSSSD SAASSSATGD
201: ERRDLAWLLE AFGSATIDQV DSAYREAGGD PFLAAGILGS TQDTQPLPPP PPDLSPHAGS AGRKPARRPR KLPVAASGIV ADVIGKGYSR PATPPVSATE
301: RSGWKGKGKD MDGESVSNGW NDERNGDRES GGGDPTFNVE EAEQFLCSML GDRSELSMGV VRDVLGQSGY DVEQALDALL DISGMGWCIP NDEMNGSSSP
401: NIFPGNGLFE EESAASIQKS PCQFPEEIPG MSYNHSERQH EFFWGEQQSS SYMKAVCEVQ HSETPSPRSA VVDSKMPQRV LESLFKIPER RTYEPSKMDW
501: KKVVKKLQSY NHPITASNQE RPKNGDGYRE FRGVSARHYD TMKGYYQKAA VAYSKGDKSY ASYLAEEGKH YRELGRKEDE KASREIFEAR NKHITNTVTI
601: DLHGQHVKQA MKLLKVHMLV CVCMPSTLLR VITGCGVEGT GKGKIKRSVI ELVEKEGIEW HEGNSGTIVL RLGGPREYRF LEHDSDSD
101: KPNAKKKSKK KKRASPAAAD GAAPAPPAAG SSPRSPLAET LTLAAAAAAS ETESSGSGSG GDASGYTRAF TSSSSGAAST SSFYAPSSSD SAASSSATGD
201: ERRDLAWLLE AFGSATIDQV DSAYREAGGD PFLAAGILGS TQDTQPLPPP PPDLSPHAGS AGRKPARRPR KLPVAASGIV ADVIGKGYSR PATPPVSATE
301: RSGWKGKGKD MDGESVSNGW NDERNGDRES GGGDPTFNVE EAEQFLCSML GDRSELSMGV VRDVLGQSGY DVEQALDALL DISGMGWCIP NDEMNGSSSP
401: NIFPGNGLFE EESAASIQKS PCQFPEEIPG MSYNHSERQH EFFWGEQQSS SYMKAVCEVQ HSETPSPRSA VVDSKMPQRV LESLFKIPER RTYEPSKMDW
501: KKVVKKLQSY NHPITASNQE RPKNGDGYRE FRGVSARHYD TMKGYYQKAA VAYSKGDKSY ASYLAEEGKH YRELGRKEDE KASREIFEAR NKHITNTVTI
601: DLHGQHVKQA MKLLKVHMLV CVCMPSTLLR VITGCGVEGT GKGKIKRSVI ELVEKEGIEW HEGNSGTIVL RLGGPREYRF LEHDSDSD
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.