Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G415100.1 | Wheat | nucleus | 81.49 | 43.45 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 81.49 | 43.45 |
| TraesCS2A01G417900.3 | Wheat | nucleus | 81.49 | 43.37 |
| Os02t0639700-01 | Rice | nucleus | 55.52 | 31.97 |
| Zm00001d051245_P001 | Maize | nucleus | 55.87 | 31.46 |
| OQU85378 | Sorghum | cytosol | 46.98 | 26.4 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 35.59 | 20.2 |
| AT3G15390.1 | Thale cress | nucleus | 25.62 | 14.69 |
| Bra027247.1-P | Field mustard | nucleus | 24.2 | 14.08 |
| CDX97665 | Canola | nucleus | 24.2 | 14.08 |
| Solyc07g063240.2.1 | Tomato | cytosol | 25.98 | 14.07 |
| CDX98557 | Canola | nucleus | 24.2 | 13.77 |
| VIT_10s0597g00020.t01 | Wine grape | cytosol | 21.35 | 13.27 |
| CDY20114 | Canola | nucleus | 22.42 | 13.24 |
| KRH21455 | Soybean | vacuole | 24.56 | 13.14 |
| PGSC0003DMT400032412 | Potato | cytosol | 25.62 | 13.14 |
| Bra021108.1-P | Field mustard | nucleus | 22.06 | 13.03 |
| CDY21839 | Canola | nucleus | 21.35 | 12.63 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 19.57 | 7.99 |
| HORVU2Hr1G098380.15 | Barley | cytosol, nucleus, plastid | 1.42 | 1.57 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G098290.4 | EnsemblPlantsGene:HORVU2Hr1G098290 | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 | SEG:seg | UniParc:UPI000B478C0C |
| UniProt:A0A287J3C3 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:682402111..682469350
Molecular Weight (calculated)
30833.7 Da
IEP (calculated)
4.929
GRAVY (calculated)
-0.828
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: TKPKWEATGE RREREQRDSG RAGRRRGARP SSQTPRVLTM DLSSSLASTS DEETRALNAL LDAFSCAFSL EDIANAYCRA NGDVNKAGDF LTDLQLSMPQ
101: SNEVDSSVET NLPQFGKAVE ENSMDNSNRT RNLSCVGKAA EESSVENSSQ TRTREKSQKS SASFGTVSSM LGKGSARATT APANTAPGKG KPLKVELPEY
201: MRDDLKTDES DSAPKRETLN NRDVEEFLFS MLGEGFKLNM EVIRDVLGSC GYDMKKSMDE LMSFSTNDLG KRPENEHIAV Q
101: SNEVDSSVET NLPQFGKAVE ENSMDNSNRT RNLSCVGKAA EESSVENSSQ TRTREKSQKS SASFGTVSSM LGKGSARATT APANTAPGKG KPLKVELPEY
201: MRDDLKTDES DSAPKRETLN NRDVEEFLFS MLGEGFKLNM EVIRDVLGSC GYDMKKSMDE LMSFSTNDLG KRPENEHIAV Q
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.