Factsheet for Os02t0639700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G436800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	70.08	64.9
TraesCS2D01G415100.1	Wheat	nucleus	69.67	64.52
TraesCS2A01G417900.3	Wheat	nucleus	69.67	64.39
OQU85378	Sorghum	cytosol	64.55	63.0
Zm00001d051245_P001	Maize	nucleus	62.7	61.32
HORVU2Hr1G098290.4	Barley	cytosol, nucleus	31.97	55.52
GSMUA_Achr4P26110_001	Banana	cytosol	41.6	41.01
Bra027247.1-P	Field mustard	nucleus	27.87	28.16
CDX97665	Canola	nucleus	27.87	28.16
CDX98557	Canola	nucleus	27.87	27.53
AT3G15390.1	Thale cress	nucleus	27.05	26.94
Bra021108.1-P	Field mustard	nucleus	26.23	26.89
CDY20114	Canola	nucleus	26.23	26.89
KRH21455	Soybean	vacuole	28.89	26.86
CDY21839	Canola	nucleus	26.02	26.74
VIT_10s0597g00020.t01	Wine grape	cytosol	24.39	26.33
Solyc07g063240.2.1	Tomato	cytosol	27.66	26.01
PGSC0003DMT400032412	Potato	cytosol	27.66	24.64
Os01t0225100-01	Rice	nucleus	9.43	16.31

Protein Annotations

EMBL:AK068974	EnsemblPlants:Os02t0639700-01	EnsemblPlantsGene:Os02g0639700	EntrezGene:4330105	InterPro:DUF1771	PANTHER:PTHR13308
PANTHER:PTHR13308:SF37	PFAM:PF08590	ProteinID:BAD25353.1	ProteinID:BAF09455.1	ProteinID:BAS79969.1	RefSeq:XP_015625691.1
SMART:SM01162	UniParc:UPI00003B4435	UniProt:Q6H7E6	MapMan:35.1	:	:

Description

Region of unknown function DUF1771 domain containing protein. (Os02t0639700-01)

Coordinates

chr2:+:25665014..25671633

Molecular Weight (calculated)

54701.3 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.753

Length

488 amino acids

Sequence
(BLAST)

001: MDLRHSQTPS SDDETRALNA LLDAFSSAFS LDDIATAYCR ANGDVNRAGD LLTELEHPMA KSNEVDSSVG TIHPPSGKAI EENSTESSGQ AKSREKMQKS
101: SASFGTVSSM LGKGSTRATV PLMNRASGKE KPPMVELPEY MRDDFNGKVD KSDSAPKRET LNNRDIEEFL FSMLGEGFKL SMDMIREVLG SCGYDIKKSM
201: EELMSVSTKD TSKKAEDKHY IAQDAAVECS STKGSCLESQ STFRNGSAYS LRGKRHSSSQ ISPGELLVSI FTVPERSEEE PIGKRYELGA NRNRVPDQKP
301: VVEPLEDISS ETNCYPVKVI LSKELVAHNE EDYQNYRRAA KQHWDMMKQY YEKAVDAFRE GNQKEVEYLL GEGKHYYMMA RLADEKSSAE IVKSKKVESK
401: NELCLDLRGQ DPANVANLVR LHLRQLSNIP SFEYLKVITG AEDGSFKSAQ RRRKVMKYLE KKSIVWTEEE SNPGTILIPI NQKQDQQD

Best Arabidopsis Sequence Match ( AT3G15390.1 )
(BLAST)

001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK

Arabidopsis Description

SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.