Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH21455 | Soybean | vacuole | 43.14 | 37.14 |
GSMUA_Achr4P26110_001 | Banana | cytosol | 33.19 | 30.3 |
HORVU2Hr1G098380.15 | Barley | cytosol, nucleus, plastid | 13.94 | 24.8 |
Os02t0639700-01 | Rice | nucleus | 26.33 | 24.39 |
Zm00001d051245_P001 | Maize | nucleus | 26.55 | 24.05 |
TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 26.99 | 23.15 |
TraesCS2D01G415100.1 | Wheat | nucleus | 26.99 | 23.15 |
TraesCS2A01G417900.3 | Wheat | nucleus | 26.99 | 23.11 |
OQU85378 | Sorghum | cytosol | 25.44 | 23.0 |
HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 13.27 | 21.35 |
VIT_06s0004g06590.t01 | Wine grape | nucleus | 23.01 | 21.27 |
TraesCS2B01G206400.1 | Wheat | mitochondrion | 18.58 | 9.73 |
Protein Annotations
ArrayExpress:VIT_10s0597g00020 | EMBL:FN596054 | EnsemblPlants:VIT_10s0597g00020.t01 | EnsemblPlantsGene:VIT_10s0597g00020 | Gene3D:3.30.1370.110 | GO:GO:0005575 |
GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF1771 | ncoils:Coil | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 |
PFAM:PF08590 | ProteinID:CCB57424 | ProteinID:CCB57424.1 | SEG:seg | SMART:SM01162 | TIGR:TC60630 |
TMHMM:TMhelix | UniParc:UPI00021085A4 | UniProt:F6HRW6 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr10:+:1279171..1288041
Molecular Weight (calculated)
51067.8 Da
IEP (calculated)
7.067
GRAVY (calculated)
-0.458
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSASSISE YDERKALEVL LDAFGSTFSL QEIAHAYCEA GRNADLAGEI LYDMNGSTST STVHASNQAT ATCNKEVKDD PSSECYSNIS EHPCPADGNP
101: KASKPKRRPV SVGTISGVIG KSYARCTASA NESCVATKPL KLDMTNFPMF ECQDKEDKFD SAKDDLMHKD VEDFIFKMLG HGFQLDRGLI QEVLGKFSLM
201: PSVGIKYLIC QQQLWMKRTV IFMNPSQKFT DYRPKSRSLM GQRKSEYMTG DRRYISLIYI TCFCFSSIYS FALSFFSWNL IPKADGEEDD SYQDLRQAVK
301: EYRTTMKEYY KAAVNAFANG DRVKADKLLE KGHFFHNKAR EADEESARKI FETRNVETED EMSLDLHVHD AKEAILILKS HLSSLSGIPS IKFLKVIMET
401: GEENISKGGA RKRLIMKLLE KHSIKWTEGS NAGIILIRVD EINPQRLSFT RK
101: KASKPKRRPV SVGTISGVIG KSYARCTASA NESCVATKPL KLDMTNFPMF ECQDKEDKFD SAKDDLMHKD VEDFIFKMLG HGFQLDRGLI QEVLGKFSLM
201: PSVGIKYLIC QQQLWMKRTV IFMNPSQKFT DYRPKSRSLM GQRKSEYMTG DRRYISLIYI TCFCFSSIYS FALSFFSWNL IPKADGEEDD SYQDLRQAVK
301: EYRTTMKEYY KAAVNAFANG DRVKADKLLE KGHFFHNKAR EADEESARKI FETRNVETED EMSLDLHVHD AKEAILILKS HLSSLSGIPS IKFLKVIMET
401: GEENISKGGA RKRLIMKLLE KHSIKWTEGS NAGIILIRVD EINPQRLSFT RK
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.