Skip to main content
crop-pal logo
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH21455 Soybean vacuole 43.14 37.14
GSMUA_Achr4P26110_001 Banana cytosol 33.19 30.3
HORVU2Hr1G098380.15 Barley cytosol, nucleus, plastid 13.94 24.8
Os02t0639700-01 Rice nucleus 26.33 24.39
Zm00001d051245_P001 Maize nucleus 26.55 24.05
TraesCS2B01G436800.1 Wheat cytosol, endoplasmic reticulum, nucleus 26.99 23.15
TraesCS2D01G415100.1 Wheat nucleus 26.99 23.15
TraesCS2A01G417900.3 Wheat nucleus 26.99 23.11
OQU85378 Sorghum cytosol 25.44 23.0
HORVU2Hr1G098290.4 Barley cytosol, nucleus 13.27 21.35
VIT_06s0004g06590.t01 Wine grape nucleus 23.01 21.27
TraesCS2B01G206400.1 Wheat mitochondrion 18.58 9.73
Protein Annotations
ArrayExpress:VIT_10s0597g00020EMBL:FN596054EnsemblPlants:VIT_10s0597g00020.t01EnsemblPlantsGene:VIT_10s0597g00020Gene3D:3.30.1370.110GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:DUF1771ncoils:CoilPANTHER:PTHR13308PANTHER:PTHR13308:SF37
PFAM:PF08590ProteinID:CCB57424ProteinID:CCB57424.1SEG:segSMART:SM01162TIGR:TC60630
TMHMM:TMhelixUniParc:UPI00021085A4UniProt:F6HRW6MapMan:35.1::
Description
No Description!
Coordinates
chr10:+:1279171..1288041
Molecular Weight (calculated)
51067.8 Da
IEP (calculated)
7.067
GRAVY (calculated)
-0.458
Length
452 amino acids
Sequence
(BLAST)
001: MEVSASSISE YDERKALEVL LDAFGSTFSL QEIAHAYCEA GRNADLAGEI LYDMNGSTST STVHASNQAT ATCNKEVKDD PSSECYSNIS EHPCPADGNP
101: KASKPKRRPV SVGTISGVIG KSYARCTASA NESCVATKPL KLDMTNFPMF ECQDKEDKFD SAKDDLMHKD VEDFIFKMLG HGFQLDRGLI QEVLGKFSLM
201: PSVGIKYLIC QQQLWMKRTV IFMNPSQKFT DYRPKSRSLM GQRKSEYMTG DRRYISLIYI TCFCFSSIYS FALSFFSWNL IPKADGEEDD SYQDLRQAVK
301: EYRTTMKEYY KAAVNAFANG DRVKADKLLE KGHFFHNKAR EADEESARKI FETRNVETED EMSLDLHVHD AKEAILILKS HLSSLSGIPS IKFLKVIMET
401: GEENISKGGA RKRLIMKLLE KHSIKWTEGS NAGIILIRVD EINPQRLSFT RK
Best Arabidopsis Sequence Match ( AT3G15390.1 )
(BLAST)
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.