Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G417900.3 | Wheat | nucleus | 97.72 | 97.54 |
| TraesCS2D01G415100.1 | Wheat | nucleus | 96.02 | 96.02 |
| HORVU2Hr1G098290.4 | Barley | cytosol, nucleus | 43.45 | 81.49 |
| Os02t0639700-01 | Rice | nucleus | 64.9 | 70.08 |
| Zm00001d051245_P001 | Maize | nucleus | 61.1 | 64.53 |
| OQU85378 | Sorghum | cytosol | 58.63 | 61.8 |
| GSMUA_Achr4P26110_001 | Banana | cytosol | 38.71 | 41.21 |
| CDX97665 | Canola | nucleus | 26.95 | 29.4 |
| Bra027247.1-P | Field mustard | nucleus | 26.95 | 29.4 |
| TraesCS2B01G206400.1 | Wheat | mitochondrion | 47.63 | 29.08 |
| AT3G15390.1 | Thale cress | nucleus | 26.57 | 28.57 |
| CDX98557 | Canola | nucleus | 26.76 | 28.54 |
| CDY20114 | Canola | nucleus | 25.43 | 28.15 |
| Bra021108.1-P | Field mustard | nucleus | 25.24 | 27.94 |
| CDY21839 | Canola | nucleus | 25.05 | 27.79 |
| VIT_10s0597g00020.t01 | Wine grape | cytosol | 23.15 | 26.99 |
| Solyc07g063240.2.1 | Tomato | cytosol | 26.0 | 26.4 |
| KRH21455 | Soybean | vacuole | 26.19 | 26.29 |
| PGSC0003DMT400032412 | Potato | cytosol | 25.43 | 24.45 |
| TraesCS3B01G177300.1 | Wheat | plastid | 21.82 | 21.34 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G436800.1 | EnsemblPlantsGene:TraesCS2B01G436800 | InterPro:DUF1771 | ncoils:Coil | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF37 |
| PFAM:PF08590 | SEG:seg | SMART:SM01162 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2B:+:628202298..628207248
Molecular Weight (calculated)
58827.4 Da
IEP (calculated)
5.042
GRAVY (calculated)
-0.598
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSSSLAST SDEETRALNA LLDAFSCAFS LEDIANAYCR ANGDVNKAGD FLTDLQLSMP QSDEVDSSVG TNLPQFGKAV EENSLDNSNQ TRNLSCVGKA
101: AEESSVENSS QTRTREKSQK SSASFGTVSS MLGKGSARAT TAPANTAPGK GKPIKVELPE YMRDDLKTDE SDSAPKRETL NNRDVEEFLF SMLGEGFKLN
201: MEVIRDVLGS CGYDMKKSME ELMSFSTKDL GKRPENEHIA VQDTAVESSF SMGSCLGSQS TSRPQITPGE LLESIFTAPE RSEEPKVRRY ELGANRRRVP
301: DQKPVVKPLE DISPPSTDLP VKIILGSKEP VVRDEDDYQN YRKAAKQHWD MMKQYYGKAV DAFREGNKKE AEYLMTEGKN YYRMARLSDE KSAAEITKSK
401: QESKNELCLD LRSQDAANVA NLLRLHLRQL ANIPSFENLR VIIGVDDGTF KMGQRRRKVE KFLEKKSVEW TEDEANPGTI LIPINQVKDQ RFLFILGYGG
501: WGVCCIFLFV HIQEIFPAGL NITIWPR
101: AEESSVENSS QTRTREKSQK SSASFGTVSS MLGKGSARAT TAPANTAPGK GKPIKVELPE YMRDDLKTDE SDSAPKRETL NNRDVEEFLF SMLGEGFKLN
201: MEVIRDVLGS CGYDMKKSME ELMSFSTKDL GKRPENEHIA VQDTAVESSF SMGSCLGSQS TSRPQITPGE LLESIFTAPE RSEEPKVRRY ELGANRRRVP
301: DQKPVVKPLE DISPPSTDLP VKIILGSKEP VVRDEDDYQN YRKAAKQHWD MMKQYYGKAV DAFREGNKKE AEYLMTEGKN YYRMARLSDE KSAAEITKSK
401: QESKNELCLD LRSQDAANVA NLLRLHLRQL ANIPSFENLR VIIGVDDGTF KMGQRRRKVE KFLEKKSVEW TEDEANPGTI LIPINQVKDQ RFLFILGYGG
501: WGVCCIFLFV HIQEIFPAGL NITIWPR
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
Arabidopsis Description
SDE5Putative nuclear RNA export factor SDE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.