Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G158200.1 | Wheat | plastid | 95.73 | 87.46 |
| TraesCS3A01G150300.2 | Wheat | plastid | 95.18 | 86.95 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 92.39 | 72.38 |
| Zm00001d017254_P002 | Maize | cytosol | 19.67 | 68.39 |
| OQU86087 | Sorghum | nucleus | 61.6 | 55.89 |
| Os01t0225100-01 | Rice | nucleus | 29.13 | 55.67 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 9.46 | 54.84 |
| Zm00001d039321_P008 | Maize | nucleus | 56.96 | 46.94 |
| CDX71154 | Canola | nucleus | 30.8 | 37.73 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 32.84 | 36.2 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 27.83 | 34.72 |
| Bra006747.1-P | Field mustard | nucleus | 31.91 | 34.61 |
| CDY61025 | Canola | nucleus | 31.91 | 34.61 |
| CDY32688 | Canola | nucleus | 32.47 | 34.38 |
| Bra020357.1-P | Field mustard | nucleus | 33.21 | 34.23 |
| CDY02832 | Canola | nucleus | 32.84 | 33.91 |
| KRG98291 | Soybean | nucleus | 31.91 | 33.79 |
| AT5G58720.1 | Thale cress | nucleus | 32.47 | 33.72 |
| KRH30312 | Soybean | nucleus | 31.17 | 32.81 |
| PGSC0003DMT400010646 | Potato | nucleus | 30.61 | 32.48 |
| Solyc06g007110.2.1 | Tomato | nucleus | 30.61 | 32.42 |
| TraesCS2B01G436800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 21.34 | 21.82 |
| TraesCS2B01G206400.1 | Wheat | mitochondrion | 15.96 | 9.97 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G177300.1 | EnsemblPlantsGene:TraesCS3B01G177300 | Gene3D:3.30.1370.110 | InterPro:DUF1771 | InterPro:IPR002625 | InterPro:Smr_dom |
| InterPro:Smr_dom_sf | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF08590 | PFscan:PS50828 | SEG:seg |
| SMART:SM00463 | SMART:SM01162 | SUPFAM:SSF160443 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3B:+:181284164..181291428
Molecular Weight (calculated)
58351.2 Da
IEP (calculated)
8.596
GRAVY (calculated)
-0.722
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPSTKKKSK KKKRPSPAAA NGVAPPTPPA PGSSPRSPLA ETLTLAAAAS ETESSGSGSG SGGDASGYAR AFTSSSSGAA STSSFYAPSS TDSAASSSAT
101: GDERRDLAWL LEAFGSATID QVDSAYREAG GDPFLAAGIL GSTQDMQPPP PPPPDLSPRA GSAGRKPARR PRKLPVAASG IVADVIGKGY SRPATPPVSA
201: TERSGWKGKG KDMDGESVSN GWNDERNGGR ESRGADPTLN VEEAEQFLCS MLGDHSELSM GVVKDVLGQS GYDVEQFPEE IPGMSYNHSE RQHEFFWGEQ
301: QSSSYMKAVC EVEHSATPSP RSAVVDSKMP QQVLESLFKI PERRTYEPSK MDWKKVVKKL QSYNHPITAS NQERPKRDGY REFRGVSARH YDTMKGYYQK
401: AAVAYSKGDK SYASYLAEEG KHYRELGRKE DEKASREIFE ARNKHITNTV TIDLHGQHVK QAMKLLKVHM LVCVCMPSLL RVITGCGVEG TGKGKIKRSV
501: IELVEKEGIE WYEGNSGTIV LRLGGPREYR FLEHDSDSD
101: GDERRDLAWL LEAFGSATID QVDSAYREAG GDPFLAAGIL GSTQDMQPPP PPPPDLSPRA GSAGRKPARR PRKLPVAASG IVADVIGKGY SRPATPPVSA
201: TERSGWKGKG KDMDGESVSN GWNDERNGGR ESRGADPTLN VEEAEQFLCS MLGDHSELSM GVVKDVLGQS GYDVEQFPEE IPGMSYNHSE RQHEFFWGEQ
301: QSSSYMKAVC EVEHSATPSP RSAVVDSKMP QQVLESLFKI PERRTYEPSK MDWKKVVKKL QSYNHPITAS NQERPKRDGY REFRGVSARH YDTMKGYYQK
401: AAVAYSKGDK SYASYLAEEG KHYRELGRKE DEKASREIFE ARNKHITNTV TIDLHGQHVK QAMKLLKVHM LVCVCMPSLL RVITGCGVEG TGKGKIKRSV
501: IELVEKEGIE WYEGNSGTIV LRLGGPREYR FLEHDSDSD
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.