Factsheet for TraesCS5B01G065600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2
TraesCS2A01G229600.2
TraesCS2A01G282200.1
TraesCS2A01G292600.1
TraesCS2B01G251300.1
TraesCS2B01G299400.1
TraesCS2B01G309000.1
TraesCS2D01G233500.1
TraesCS2D01G281000.1
TraesCS2D01G290400.1
TraesCS3B01G358800.1
TraesCS3D01G322300.1
TraesCS5A01G194900.2
TraesCS5B01G190300.1
TraesCS5D01G198100.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G06770.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G06770.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G229600.2	AT1G30860.1	21798944
AT2G30580.1	TraesCS2B01G251300.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS2D01G233500.1	AT1G30860.1	21798944
AT2G30580.1	TraesCS5A01G194900.2	AT2G46550.1	21798944
AT2G30580.1	TraesCS5B01G190300.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS5D01G198100.1	AT2G46550.1	21798944
AT2G30580.1	TraesCS2A01G292600.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2B01G309000.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS2D01G290400.1	AT3G09980.1	21798944
AT2G30580.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT2G30580.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS1D01G223600.2	AT5G05410.1	18552202
AT2G30580.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT2G30580.1	TraesCS7D01G134000.1	AT5G22310.1	21798944
AT3G23060.1	TraesCS3B01G358800.1	AT5G45490.1	21798944
AT3G23060.1	TraesCS3D01G322300.1	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G069800.1	Wheat	nucleus	96.61	96.61
TraesCS5A01G058000.1	Wheat	nucleus	96.61	96.61
HORVU5Hr1G014430.6	Barley	nucleus	86.44	86.08
Os12t0600200-03	Rice	cytosol, nucleus	45.76	62.79
Zm00001d030985_P001	Maize	nucleus	55.72	55.25
Zm00001d041405_P001	Maize	nucleus	55.72	54.12
OQU79520	Sorghum	nucleus	58.47	50.0
GSMUA_Achr9P10710_001	Banana	nucleus	37.5	44.47
TraesCS5B01G382100.1	Wheat	nucleus	45.97	42.05
Solyc09g065990.2.1	Tomato	nucleus	38.14	41.86
PGSC0003DMT400038984	Potato	nucleus	37.71	41.4
VIT_07s0141g00610.t01	Wine grape	nucleus	36.86	40.47
Solyc06g084040.2.1	Tomato	nucleus	36.65	40.14
GSMUA_Achr4P17750_001	Banana	nucleus	32.84	39.85
KRG95629	Soybean	nucleus	36.02	39.72
Solyc06g008600.2.1	Tomato	nucleus	34.75	39.23
AT2G30580.1	Thale cress	nucleus	34.75	39.05
KRH67309	Soybean	nucleus	36.44	38.65
GSMUA_Achr5P03230_001	Banana	nucleus	36.02	38.64
VIT_14s0081g00070.t01	Wine grape	nucleus	36.44	38.31
PGSC0003DMT400051660	Potato	nucleus	36.65	38.27
CDX97807	Canola	nucleus	33.47	37.98
CDY29659	Canola	nucleus	33.69	37.77
CDY47131	Canola	nucleus	33.26	37.65
CDY10748	Canola	nucleus	33.47	37.53
AT1G06770.1	Thale cress	nucleus	33.47	37.53
KRG92687	Soybean	nucleus	33.9	36.95
KRH34095	Soybean	nucleus	33.69	36.81
KRH32110	Soybean	nucleus	33.26	36.6
KRH71326	Soybean	mitochondrion, nucleus	33.26	36.43
Bra018304.1-P	Field mustard	nucleus	33.26	36.34
TraesCS5B01G447600.1	Wheat	nucleus	29.03	35.04
CDY23989	Canola	nucleus	31.78	34.97
VIT_05s0020g04730.t01	Wine grape	nucleus	34.53	34.39
Bra015526.1-P	Field mustard	nucleus	17.58	33.88
TraesCS5B01G385300.1	Wheat	mitochondrion	27.75	32.75
PGSC0003DMT400013629	Potato	nucleus	20.13	32.42
Bra021651.1-P	Field mustard	nucleus	23.94	32.1
CDY06664	Canola	nucleus	24.58	30.29
Bra022807.1-P	Field mustard	cytosol	4.24	28.57
Bra015525.1-P	Field mustard	cytosol	23.94	26.97
KRG92425	Soybean	nucleus	23.94	26.53
PGSC0003DMT400087291	Potato	nucleus	17.37	26.37
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.26	26.0
CDY61240	Canola	nucleus	9.75	25.56
KRH34379	Soybean	nucleus	23.09	25.0
CDX94870	Canola	nucleus	21.61	22.72
CDX92974	Canola	cytosol	21.61	22.03
Bra001901.1-P	Field mustard	nucleus	21.19	21.6
PGSC0003DMT400087288	Potato	plastid	7.42	21.08
Solyc09g083300.1.1	Tomato	nucleus, plastid	11.65	20.6
PGSC0003DMT400010761	Potato	nucleus	21.4	20.45
AT3G23060.1	Thale cress	nucleus	20.76	20.42
Solyc09g083310.1.1	Tomato	nucleus	15.25	18.0
PGSC0003DMT400015657	Potato	nucleus, plastid	14.19	16.96

Protein Annotations

EnsemblPlants:TraesCS5B01G065600.1	EnsemblPlantsGene:TraesCS5B01G065600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF47	PFAM:PF13923	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	MapMan:12.3.5.1.1.1	:

Description

No Description!

Coordinates

chr5B:+:73828030..73833637

Molecular Weight (calculated)

51139.4 Da

IEP (calculated)

10.338

GRAVY (calculated)

-0.612

Length

472 amino acids

Sequence
(BLAST)

001: MQSGPASPAP PEDTPMAAAA AVVEVEVMEE ADGEQAKEDA VKVVEAQAER GVKRGRGRPR RRPLAVEGSG VVMVKREQLA RCMTCQLCHR LLRNATTISE
101: CLHTFCRKCI YKKLNDEECD HCPVCKIDLG CAPIEKLRAD HNKQDVRSKN FPLKRNKIDA KGSPVTLPIK RKERSISSLV VDTPRITTGL TGRRTRAVTR
201: KAAAALRGLG PILDPVERDN GSANKHPDNL SLLDSLSKVP QTRRKASSIA ETSSHNSNKD KAGDDKDLDK ADLWKPLNCL VEAASKTKSF RSSPSVKGDQ
301: PNGSPSSEHA SKEKSVENLR KTRFQDDKKD APQPVMLKKK GTGRTKNATS VAAASQKAQN SRALNPVWFS LIASFEQKGL PPLPQIPAHY LRIKDGSIAA
401: SSIQRYIMQK LSLXXXXXVE LSCCGQSINP IQPVHNLMDR WLRVGPSRHL QTSVGSSGGE YVMVITYGRP KS

Best Arabidopsis Sequence Match ( AT1G06770.1 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEIEIKCMGE AVIPTLTLYN LVDLWLQKSS NHQRFAALVG
401: SSAKDFTMVL VYARKLPECN M

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.